miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 41951 0.66 0.305716
Target:  5'- ---cCGGCGUgcucgcgUGGUGCgUGCGC-GGCg -3'
miRNA:   3'- cauuGCCGCG-------GCCACGgGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 41851 0.66 0.299114
Target:  5'- cUGGCGGCGCCuGaUGCUCGUGCcguucGaGCg -3'
miRNA:   3'- cAUUGCCGCGGcC-ACGGGCGCGa----C-CG- -5'
28013 5' -62.1 NC_005887.1 + 41616 0.67 0.24525
Target:  5'- aUGGCGGCagcaCCGGUGCUgGUacgagaucaGCUGGUu -3'
miRNA:   3'- cAUUGCCGc---GGCCACGGgCG---------CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 41611 0.66 0.313936
Target:  5'- --uGCGGCgGCCGGcgcgGCCCGUgaggaucuGCUGcGUc -3'
miRNA:   3'- cauUGCCG-CGGCCa---CGGGCG--------CGAC-CG- -5'
28013 5' -62.1 NC_005887.1 + 41484 0.68 0.210336
Target:  5'- -cGGCGGCG-CGG-GCCaCGCGUccacgGGCa -3'
miRNA:   3'- caUUGCCGCgGCCaCGG-GCGCGa----CCG- -5'
28013 5' -62.1 NC_005887.1 + 41361 0.67 0.277906
Target:  5'- --cACGGCgGCCGGcaauuUGCgCGUGUcGGCg -3'
miRNA:   3'- cauUGCCG-CGGCC-----ACGgGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 41269 0.7 0.166042
Target:  5'- -cAAUGGCGCCGucGaCCUGCGCacgGGCg -3'
miRNA:   3'- caUUGCCGCGGCcaC-GGGCGCGa--CCG- -5'
28013 5' -62.1 NC_005887.1 + 39979 0.67 0.271108
Target:  5'- -gAACGGCGUgucuucgucguCGGccUGCgaGCGCUGGUc -3'
miRNA:   3'- caUUGCCGCG-----------GCC--ACGggCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 39904 0.69 0.194539
Target:  5'- -cGACGGCGCCguagcgcgcgaGGUGUCauucgucgGCGCgGGCu -3'
miRNA:   3'- caUUGCCGCGG-----------CCACGGg-------CGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 39530 0.69 0.189509
Target:  5'- -cAACuGGCGCCGGcucUGUaccccaauCCGCGCgacgGGCu -3'
miRNA:   3'- caUUG-CCGCGGCC---ACG--------GGCGCGa---CCG- -5'
28013 5' -62.1 NC_005887.1 + 39414 0.71 0.145216
Target:  5'- -cGGCGGUGCCGcGgcGCuuGCGCagcuUGGCg -3'
miRNA:   3'- caUUGCCGCGGC-Ca-CGggCGCG----ACCG- -5'
28013 5' -62.1 NC_005887.1 + 39394 0.67 0.257914
Target:  5'- -cGGCGGCGCaaccguGGUcGCgaCCGCGUUcGGCa -3'
miRNA:   3'- caUUGCCGCGg-----CCA-CG--GGCGCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 37721 0.66 0.306457
Target:  5'- uUGAUcGCGCCGGcgGCCaccgGCGCcgcGGCg -3'
miRNA:   3'- cAUUGcCGCGGCCa-CGGg---CGCGa--CCG- -5'
28013 5' -62.1 NC_005887.1 + 37447 0.69 0.194539
Target:  5'- --cGCGGCGCU--UGCCUGCGC-GGUu -3'
miRNA:   3'- cauUGCCGCGGccACGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 37305 0.67 0.264444
Target:  5'- cGgcGCGGCcauuGCC-GUGCCUuCGUUGGCu -3'
miRNA:   3'- -CauUGCCG----CGGcCACGGGcGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 36946 0.75 0.072825
Target:  5'- --uGCGGCGCCGcccGCCgguucaccgguCGCGCUGGCu -3'
miRNA:   3'- cauUGCCGCGGCca-CGG-----------GCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 36057 0.67 0.271108
Target:  5'- gGUGugGGCaGaCCGGUGCgaaccgaCGUGCggUGGCc -3'
miRNA:   3'- -CAUugCCG-C-GGCCACGg------GCGCG--ACCG- -5'
28013 5' -62.1 NC_005887.1 + 34240 0.67 0.264444
Target:  5'- -cAGCGGCGCCucgGCgaGCGC-GGCg -3'
miRNA:   3'- caUUGCCGCGGccaCGggCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 33252 1.11 0.000106
Target:  5'- aGUAACGGCGCCGGUGCCCGCGCUGGCa -3'
miRNA:   3'- -CAUUGCCGCGGCCACGGGCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 33042 0.7 0.175099
Target:  5'- cGUGugcguCGGCGUuuCGGUGCCCGUaaccuGC-GGCg -3'
miRNA:   3'- -CAUu----GCCGCG--GCCACGGGCG-----CGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.