miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 32738 0.67 0.264444
Target:  5'- gGUAgcGCGGCGCUcGcGUgCGCGCcGGCg -3'
miRNA:   3'- -CAU--UGCCGCGGcCaCGgGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 32502 0.69 0.189509
Target:  5'- --uGCGGCGCgCGGcguucagguUGgCCGCGCUgaccGGCu -3'
miRNA:   3'- cauUGCCGCG-GCC---------ACgGGCGCGA----CCG- -5'
28013 5' -62.1 NC_005887.1 + 32073 0.67 0.257914
Target:  5'- -cGACGuaGCGCaCGGUcuGCCCGUugacCUGGCg -3'
miRNA:   3'- caUUGC--CGCG-GCCA--CGGGCGc---GACCG- -5'
28013 5' -62.1 NC_005887.1 + 30954 0.79 0.031901
Target:  5'- uUGGCGGCGCCGGccGCCaGCGCUccGGCu -3'
miRNA:   3'- cAUUGCCGCGGCCa-CGGgCGCGA--CCG- -5'
28013 5' -62.1 NC_005887.1 + 30921 0.67 0.264444
Target:  5'- --cGCGGCaucGCCuuGUGCCagCGCGCUcGGCg -3'
miRNA:   3'- cauUGCCG---CGGc-CACGG--GCGCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 30225 0.66 0.284839
Target:  5'- -cGACGGCgGCC--UGCUCGUcCUGGCg -3'
miRNA:   3'- caUUGCCG-CGGccACGGGCGcGACCG- -5'
28013 5' -62.1 NC_005887.1 + 29941 0.7 0.166042
Target:  5'- --cGCGGUGUCGuUGCCC-UGCUGGUa -3'
miRNA:   3'- cauUGCCGCGGCcACGGGcGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 28836 0.68 0.239114
Target:  5'- cGUGGC-GCGCa--UGCCCGUGCcGGCg -3'
miRNA:   3'- -CAUUGcCGCGgccACGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 28733 0.66 0.306457
Target:  5'- --uGCGGcCGCCGc-GCgCCGCGCUGccaGCa -3'
miRNA:   3'- cauUGCC-GCGGCcaCG-GGCGCGAC---CG- -5'
28013 5' -62.1 NC_005887.1 + 28332 0.67 0.257914
Target:  5'- -cGGCGGCgcGCCGGcGgUUGCGgaGGCg -3'
miRNA:   3'- caUUGCCG--CGGCCaCgGGCGCgaCCG- -5'
28013 5' -62.1 NC_005887.1 + 28043 0.66 0.306457
Target:  5'- ---uCGGCGUCG--GCCUGCGCUuGCg -3'
miRNA:   3'- cauuGCCGCGGCcaCGGGCGCGAcCG- -5'
28013 5' -62.1 NC_005887.1 + 27747 0.66 0.299114
Target:  5'- -aGACGGaagugGCCGaUGCCgagCGCGCcGGCg -3'
miRNA:   3'- caUUGCCg----CGGCcACGG---GCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 27702 0.68 0.233106
Target:  5'- ---cCGGCGaCGGgcaGCaCCGCGCcGGCu -3'
miRNA:   3'- cauuGCCGCgGCCa--CG-GGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 27356 0.67 0.257914
Target:  5'- -gGGCGGCacGCCuGcgGCCUGCGC-GGCc -3'
miRNA:   3'- caUUGCCG--CGGcCa-CGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 26325 0.66 0.291909
Target:  5'- ----aGGUucagGCCGuG-GCCgGCGCUGGCc -3'
miRNA:   3'- cauugCCG----CGGC-CaCGGgCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 26208 0.77 0.046284
Target:  5'- -gGGCGGCGgUGGccgGCCUGCaGCUGGCg -3'
miRNA:   3'- caUUGCCGCgGCCa--CGGGCG-CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 26101 0.74 0.077031
Target:  5'- ---uCGGCGaCGGUGCCCGUGCgcucgccGGCc -3'
miRNA:   3'- cauuGCCGCgGCCACGGGCGCGa------CCG- -5'
28013 5' -62.1 NC_005887.1 + 26060 0.67 0.24463
Target:  5'- aUggUGGUGCUccuGGUcagcgcgucagcgGCCCGCGC-GGCg -3'
miRNA:   3'- cAuuGCCGCGG---CCA-------------CGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 25832 0.66 0.306457
Target:  5'- ---uCGGCGCCGGcgGCgaCGCGaucGGCc -3'
miRNA:   3'- cauuGCCGCGGCCa-CGg-GCGCga-CCG- -5'
28013 5' -62.1 NC_005887.1 + 24879 0.73 0.091091
Target:  5'- -aGGCGGCgGCCGaUGCCgCGCGCUcGGUc -3'
miRNA:   3'- caUUGCCG-CGGCcACGG-GCGCGA-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.