miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 13933 0.66 0.329308
Target:  5'- --cACGaGCGCC--UGCgCGCGCUcGGCu -3'
miRNA:   3'- cauUGC-CGCGGccACGgGCGCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 14221 0.7 0.153244
Target:  5'- -gGGCGGCGCCGcGcUGUUCGgCGC-GGCa -3'
miRNA:   3'- caUUGCCGCGGC-C-ACGGGC-GCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 14506 0.66 0.321553
Target:  5'- --cGCGGUGCuUGGUgGUCCGCuuGCaGGCg -3'
miRNA:   3'- cauUGCCGCG-GCCA-CGGGCG--CGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 14641 0.7 0.175099
Target:  5'- --cACGGCaGCCGGcgcggugcUGCCCGuCGCcGGUu -3'
miRNA:   3'- cauUGCCG-CGGCC--------ACGGGC-GCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 14710 0.68 0.233106
Target:  5'- -gGGCGG-GCCGGgcgcgGCgaUCGCGCaGGCg -3'
miRNA:   3'- caUUGCCgCGGCCa----CG--GGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 15844 0.7 0.161672
Target:  5'- --cGCGGCGCgaucgaGGgaaacGCCCGCGCgcagcaGGCg -3'
miRNA:   3'- cauUGCCGCGg-----CCa----CGGGCGCGa-----CCG- -5'
28013 5' -62.1 NC_005887.1 + 15870 0.66 0.291908
Target:  5'- -aAGCG--GCCGGcaUGCCCGUGCUcguGGCc -3'
miRNA:   3'- caUUGCcgCGGCC--ACGGGCGCGA---CCG- -5'
28013 5' -62.1 NC_005887.1 + 17342 0.66 0.284839
Target:  5'- -cGGCGGcCGCCGGcGCgagCUGaCGCUcGGCa -3'
miRNA:   3'- caUUGCC-GCGGCCaCG---GGC-GCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 17804 0.66 0.306457
Target:  5'- -cAugGGCGCCcggccgaaGGUGCggCCGCGCgugauGCu -3'
miRNA:   3'- caUugCCGCGG--------CCACG--GGCGCGac---CG- -5'
28013 5' -62.1 NC_005887.1 + 18375 0.72 0.116813
Target:  5'- -aGACGGCgcGCCGGcGCUCGCGaacccgaUGGCc -3'
miRNA:   3'- caUUGCCG--CGGCCaCGGGCGCg------ACCG- -5'
28013 5' -62.1 NC_005887.1 + 18399 0.66 0.329308
Target:  5'- ----aGGuCGUCGGUGCgUGCGCagacGGCc -3'
miRNA:   3'- cauugCC-GCGGCCACGgGCGCGa---CCG- -5'
28013 5' -62.1 NC_005887.1 + 18555 0.74 0.076386
Target:  5'- -cGGCGGCGCCGGcuucgcgggcgacaUGCUCGuCGC-GGCg -3'
miRNA:   3'- caUUGCCGCGGCC--------------ACGGGC-GCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 20799 0.69 0.207091
Target:  5'- cGUAAUuGCGCCGGUcGCCUGCaGCgucgugaauuucccGGCa -3'
miRNA:   3'- -CAUUGcCGCGGCCA-CGGGCG-CGa-------------CCG- -5'
28013 5' -62.1 NC_005887.1 + 20862 0.71 0.133892
Target:  5'- gGUAACGGUGuuGGcgGCCUgaaugauagugGCGCcGGCg -3'
miRNA:   3'- -CAUUGCCGCggCCa-CGGG-----------CGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 21040 0.66 0.329308
Target:  5'- ---uCGGCGCgGugggcGUGCCCGUGaaugugGGCg -3'
miRNA:   3'- cauuGCCGCGgC-----CACGGGCGCga----CCG- -5'
28013 5' -62.1 NC_005887.1 + 21067 0.76 0.0549
Target:  5'- ---uCGGCGCCGGUGUggggUgGCGUUGGCu -3'
miRNA:   3'- cauuGCCGCGGCCACG----GgCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 21273 0.68 0.233106
Target:  5'- --cGCGGCGgCGGcGUaugCGCuGCUGGCg -3'
miRNA:   3'- cauUGCCGCgGCCaCGg--GCG-CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 22865 0.73 0.099004
Target:  5'- -cGACGGcCGCCGGccGCUaucagauccucgCGCGCUGGUg -3'
miRNA:   3'- caUUGCC-GCGGCCa-CGG------------GCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 23278 0.69 0.194539
Target:  5'- cGUGGCGGuUGCCGcaGCCCGCGCcGa- -3'
miRNA:   3'- -CAUUGCC-GCGGCcaCGGGCGCGaCcg -5'
28013 5' -62.1 NC_005887.1 + 23948 0.69 0.177901
Target:  5'- -cGACGGCGCCGcGgcguagGCCaucggguucgcgaGCGCcGGCg -3'
miRNA:   3'- caUUGCCGCGGC-Ca-----CGGg------------CGCGaCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.