miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 33042 0.7 0.175099
Target:  5'- cGUGugcguCGGCGUuuCGGUGCCCGUaaccuGC-GGCg -3'
miRNA:   3'- -CAUu----GCCGCG--GCCACGGGCG-----CGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 14641 0.7 0.175099
Target:  5'- --cACGGCaGCCGGcgcggugcUGCCCGuCGCcGGUu -3'
miRNA:   3'- cauUGCCG-CGGCC--------ACGGGC-GCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 23948 0.69 0.177901
Target:  5'- -cGACGGCGCCGcGgcguagGCCaucggguucgcgaGCGCcGGCg -3'
miRNA:   3'- caUUGCCGCGGC-Ca-----CGGg------------CGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 32502 0.69 0.189509
Target:  5'- --uGCGGCGCgCGGcguucagguUGgCCGCGCUgaccGGCu -3'
miRNA:   3'- cauUGCCGCG-GCC---------ACgGGCGCGA----CCG- -5'
28013 5' -62.1 NC_005887.1 + 39530 0.69 0.189509
Target:  5'- -cAACuGGCGCCGGcucUGUaccccaauCCGCGCgacgGGCu -3'
miRNA:   3'- caUUG-CCGCGGCC---ACG--------GGCGCGa---CCG- -5'
28013 5' -62.1 NC_005887.1 + 39904 0.69 0.194539
Target:  5'- -cGACGGCGCCguagcgcgcgaGGUGUCauucgucgGCGCgGGCu -3'
miRNA:   3'- caUUGCCGCGG-----------CCACGGg-------CGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 24382 0.69 0.194539
Target:  5'- --uGCGGCcgauGCCGGcgaGCCCGCGCaucaUGuGCg -3'
miRNA:   3'- cauUGCCG----CGGCCa--CGGGCGCG----AC-CG- -5'
28013 5' -62.1 NC_005887.1 + 23278 0.69 0.194539
Target:  5'- cGUGGCGGuUGCCGcaGCCCGCGCcGa- -3'
miRNA:   3'- -CAUUGCC-GCGGCcaCGGGCGCGaCcg -5'
28013 5' -62.1 NC_005887.1 + 37447 0.69 0.194539
Target:  5'- --cGCGGCGCU--UGCCUGCGC-GGUu -3'
miRNA:   3'- cauUGCCGCGGccACGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 20799 0.69 0.207091
Target:  5'- cGUAAUuGCGCCGGUcGCCUGCaGCgucgugaauuucccGGCa -3'
miRNA:   3'- -CAUUGcCGCGGCCA-CGGGCG-CGa-------------CCG- -5'
28013 5' -62.1 NC_005887.1 + 11098 0.68 0.210336
Target:  5'- cGUGGCGcaucgGCUGGUGCgCGCgaaGCUGGCc -3'
miRNA:   3'- -CAUUGCcg---CGGCCACGgGCG---CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 41484 0.68 0.210336
Target:  5'- -cGGCGGCG-CGG-GCCaCGCGUccacgGGCa -3'
miRNA:   3'- caUUGCCGCgGCCaCGG-GCGCGa----CCG- -5'
28013 5' -62.1 NC_005887.1 + 24206 0.68 0.227226
Target:  5'- cGgcACGaCGUCGGcgGCCCGCGCUucgccGGUu -3'
miRNA:   3'- -CauUGCcGCGGCCa-CGGGCGCGA-----CCG- -5'
28013 5' -62.1 NC_005887.1 + 21273 0.68 0.233106
Target:  5'- --cGCGGCGgCGGcGUaugCGCuGCUGGCg -3'
miRNA:   3'- cauUGCCGCgGCCaCGg--GCG-CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 10208 0.68 0.233106
Target:  5'- --uGCGucGCGUCGaUGCCCGCGCcggacGGCg -3'
miRNA:   3'- cauUGC--CGCGGCcACGGGCGCGa----CCG- -5'
28013 5' -62.1 NC_005887.1 + 27702 0.68 0.233106
Target:  5'- ---cCGGCGaCGGgcaGCaCCGCGCcGGCu -3'
miRNA:   3'- cauuGCCGCgGCCa--CG-GGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 14710 0.68 0.233106
Target:  5'- -gGGCGG-GCCGGgcgcgGCgaUCGCGCaGGCg -3'
miRNA:   3'- caUUGCCgCGGCCa----CG--GGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 28836 0.68 0.239114
Target:  5'- cGUGGC-GCGCa--UGCCCGUGCcGGCg -3'
miRNA:   3'- -CAUUGcCGCGgccACGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 26060 0.67 0.24463
Target:  5'- aUggUGGUGCUccuGGUcagcgcgucagcgGCCCGCGC-GGCg -3'
miRNA:   3'- cAuuGCCGCGG---CCA-------------CGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 41616 0.67 0.24525
Target:  5'- aUGGCGGCagcaCCGGUGCUgGUacgagaucaGCUGGUu -3'
miRNA:   3'- cAUUGCCGc---GGCCACGGgCG---------CGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.