miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 33252 1.11 0.000106
Target:  5'- aGUAACGGCGCCGGUGCCCGCGCUGGCa -3'
miRNA:   3'- -CAUUGCCGCGGCCACGGGCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 30954 0.79 0.031901
Target:  5'- uUGGCGGCGCCGGccGCCaGCGCUccGGCu -3'
miRNA:   3'- cAUUGCCGCGGCCa-CGGgCGCGA--CCG- -5'
28013 5' -62.1 NC_005887.1 + 4625 0.77 0.044983
Target:  5'- --cGCGGCGCCGGUGgCCGC-C-GGCg -3'
miRNA:   3'- cauUGCCGCGGCCACgGGCGcGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 26208 0.77 0.046284
Target:  5'- -gGGCGGCGgUGGccgGCCUGCaGCUGGCg -3'
miRNA:   3'- caUUGCCGCgGCCa--CGGGCG-CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 21067 0.76 0.0549
Target:  5'- ---uCGGCGCCGGUGUggggUgGCGUUGGCu -3'
miRNA:   3'- cauuGCCGCGGCCACG----GgCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 1484 0.75 0.065064
Target:  5'- -cGACGGCGUgCGGcGCUCGCGC-GGCg -3'
miRNA:   3'- caUUGCCGCG-GCCaCGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 36946 0.75 0.072825
Target:  5'- --uGCGGCGCCGcccGCCgguucaccgguCGCGCUGGCu -3'
miRNA:   3'- cauUGCCGCGGCca-CGG-----------GCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 18555 0.74 0.076386
Target:  5'- -cGGCGGCGCCGGcuucgcgggcgacaUGCUCGuCGC-GGCg -3'
miRNA:   3'- caUUGCCGCGGCC--------------ACGGGC-GCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 26101 0.74 0.077031
Target:  5'- ---uCGGCGaCGGUGCCCGUGCgcucgccGGCc -3'
miRNA:   3'- cauuGCCGCgGCCACGGGCGCGa------CCG- -5'
28013 5' -62.1 NC_005887.1 + 24879 0.73 0.091091
Target:  5'- -aGGCGGCgGCCGaUGCCgCGCGCUcGGUc -3'
miRNA:   3'- caUUGCCG-CGGCcACGG-GCGCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 22865 0.73 0.099004
Target:  5'- -cGACGGcCGCCGGccGCUaucagauccucgCGCGCUGGUg -3'
miRNA:   3'- caUUGCC-GCGGCCa-CGG------------GCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 18375 0.72 0.116813
Target:  5'- -aGACGGCgcGCCGGcGCUCGCGaacccgaUGGCc -3'
miRNA:   3'- caUUGCCG--CGGCCaCGGGCGCg------ACCG- -5'
28013 5' -62.1 NC_005887.1 + 20862 0.71 0.133892
Target:  5'- gGUAACGGUGuuGGcgGCCUgaaugauagugGCGCcGGCg -3'
miRNA:   3'- -CAUUGCCGCggCCa-CGGG-----------CGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 39414 0.71 0.145216
Target:  5'- -cGGCGGUGCCGcGgcGCuuGCGCagcuUGGCg -3'
miRNA:   3'- caUUGCCGCGGC-Ca-CGggCGCG----ACCG- -5'
28013 5' -62.1 NC_005887.1 + 14221 0.7 0.153244
Target:  5'- -gGGCGGCGCCGcGcUGUUCGgCGC-GGCa -3'
miRNA:   3'- caUUGCCGCGGC-C-ACGGGC-GCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 8372 0.7 0.153244
Target:  5'- cGUGauACGGCGCCGGUGCUgacggaCGcCGCacGCg -3'
miRNA:   3'- -CAU--UGCCGCGGCCACGG------GC-GCGacCG- -5'
28013 5' -62.1 NC_005887.1 + 15844 0.7 0.161672
Target:  5'- --cGCGGCGCgaucgaGGgaaacGCCCGCGCgcagcaGGCg -3'
miRNA:   3'- cauUGCCGCGg-----CCa----CGGGCGCGa-----CCG- -5'
28013 5' -62.1 NC_005887.1 + 29941 0.7 0.166042
Target:  5'- --cGCGGUGUCGuUGCCC-UGCUGGUa -3'
miRNA:   3'- cauUGCCGCGGCcACGGGcGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 41269 0.7 0.166042
Target:  5'- -cAAUGGCGCCGucGaCCUGCGCacgGGCg -3'
miRNA:   3'- caUUGCCGCGGCcaC-GGGCGCGa--CCG- -5'
28013 5' -62.1 NC_005887.1 + 5014 0.7 0.170516
Target:  5'- --uGCGGCGaCCGaugccaGUGCCgGCGCUGcuGCg -3'
miRNA:   3'- cauUGCCGC-GGC------CACGGgCGCGAC--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.