Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28013 | 5' | -62.1 | NC_005887.1 | + | 33252 | 1.11 | 0.000106 |
Target: 5'- aGUAACGGCGCCGGUGCCCGCGCUGGCa -3' miRNA: 3'- -CAUUGCCGCGGCCACGGGCGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 30954 | 0.79 | 0.031901 |
Target: 5'- uUGGCGGCGCCGGccGCCaGCGCUccGGCu -3' miRNA: 3'- cAUUGCCGCGGCCa-CGGgCGCGA--CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 4625 | 0.77 | 0.044983 |
Target: 5'- --cGCGGCGCCGGUGgCCGC-C-GGCg -3' miRNA: 3'- cauUGCCGCGGCCACgGGCGcGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 26208 | 0.77 | 0.046284 |
Target: 5'- -gGGCGGCGgUGGccgGCCUGCaGCUGGCg -3' miRNA: 3'- caUUGCCGCgGCCa--CGGGCG-CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 21067 | 0.76 | 0.0549 |
Target: 5'- ---uCGGCGCCGGUGUggggUgGCGUUGGCu -3' miRNA: 3'- cauuGCCGCGGCCACG----GgCGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 1484 | 0.75 | 0.065064 |
Target: 5'- -cGACGGCGUgCGGcGCUCGCGC-GGCg -3' miRNA: 3'- caUUGCCGCG-GCCaCGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 36946 | 0.75 | 0.072825 |
Target: 5'- --uGCGGCGCCGcccGCCgguucaccgguCGCGCUGGCu -3' miRNA: 3'- cauUGCCGCGGCca-CGG-----------GCGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 18555 | 0.74 | 0.076386 |
Target: 5'- -cGGCGGCGCCGGcuucgcgggcgacaUGCUCGuCGC-GGCg -3' miRNA: 3'- caUUGCCGCGGCC--------------ACGGGC-GCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 26101 | 0.74 | 0.077031 |
Target: 5'- ---uCGGCGaCGGUGCCCGUGCgcucgccGGCc -3' miRNA: 3'- cauuGCCGCgGCCACGGGCGCGa------CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 24879 | 0.73 | 0.091091 |
Target: 5'- -aGGCGGCgGCCGaUGCCgCGCGCUcGGUc -3' miRNA: 3'- caUUGCCG-CGGCcACGG-GCGCGA-CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 22865 | 0.73 | 0.099004 |
Target: 5'- -cGACGGcCGCCGGccGCUaucagauccucgCGCGCUGGUg -3' miRNA: 3'- caUUGCC-GCGGCCa-CGG------------GCGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 18375 | 0.72 | 0.116813 |
Target: 5'- -aGACGGCgcGCCGGcGCUCGCGaacccgaUGGCc -3' miRNA: 3'- caUUGCCG--CGGCCaCGGGCGCg------ACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 20862 | 0.71 | 0.133892 |
Target: 5'- gGUAACGGUGuuGGcgGCCUgaaugauagugGCGCcGGCg -3' miRNA: 3'- -CAUUGCCGCggCCa-CGGG-----------CGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 39414 | 0.71 | 0.145216 |
Target: 5'- -cGGCGGUGCCGcGgcGCuuGCGCagcuUGGCg -3' miRNA: 3'- caUUGCCGCGGC-Ca-CGggCGCG----ACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 14221 | 0.7 | 0.153244 |
Target: 5'- -gGGCGGCGCCGcGcUGUUCGgCGC-GGCa -3' miRNA: 3'- caUUGCCGCGGC-C-ACGGGC-GCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 8372 | 0.7 | 0.153244 |
Target: 5'- cGUGauACGGCGCCGGUGCUgacggaCGcCGCacGCg -3' miRNA: 3'- -CAU--UGCCGCGGCCACGG------GC-GCGacCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 15844 | 0.7 | 0.161672 |
Target: 5'- --cGCGGCGCgaucgaGGgaaacGCCCGCGCgcagcaGGCg -3' miRNA: 3'- cauUGCCGCGg-----CCa----CGGGCGCGa-----CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 29941 | 0.7 | 0.166042 |
Target: 5'- --cGCGGUGUCGuUGCCC-UGCUGGUa -3' miRNA: 3'- cauUGCCGCGGCcACGGGcGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 41269 | 0.7 | 0.166042 |
Target: 5'- -cAAUGGCGCCGucGaCCUGCGCacgGGCg -3' miRNA: 3'- caUUGCCGCGGCcaC-GGGCGCGa--CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 5014 | 0.7 | 0.170516 |
Target: 5'- --uGCGGCGaCCGaugccaGUGCCgGCGCUGcuGCg -3' miRNA: 3'- cauUGCCGC-GGC------CACGGgCGCGAC--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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