miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 15870 0.66 0.291908
Target:  5'- -aAGCG--GCCGGcaUGCCCGUGCUcguGGCc -3'
miRNA:   3'- caUUGCcgCGGCC--ACGGGCGCGA---CCG- -5'
28013 5' -62.1 NC_005887.1 + 17342 0.66 0.284839
Target:  5'- -cGGCGGcCGCCGGcGCgagCUGaCGCUcGGCa -3'
miRNA:   3'- caUUGCC-GCGGCCaCG---GGC-GCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 30225 0.66 0.284839
Target:  5'- -cGACGGCgGCC--UGCUCGUcCUGGCg -3'
miRNA:   3'- caUUGCCG-CGGccACGGGCGcGACCG- -5'
28013 5' -62.1 NC_005887.1 + 4893 0.66 0.284839
Target:  5'- -cGAUGGuCGCCGaGgGCCgGCGCgaGGUg -3'
miRNA:   3'- caUUGCC-GCGGC-CaCGGgCGCGa-CCG- -5'
28013 5' -62.1 NC_005887.1 + 745 0.66 0.283442
Target:  5'- -gGGCcGCGCCGGccgccgcaccugGgCCGcCGCUGGCc -3'
miRNA:   3'- caUUGcCGCGGCCa-----------CgGGC-GCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 12564 0.67 0.280663
Target:  5'- -cGACGGcCGCCGGcaugcgcauggUGUCCGCcgacccggccgcgacGCUcGGCg -3'
miRNA:   3'- caUUGCC-GCGGCC-----------ACGGGCG---------------CGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 6477 0.67 0.277906
Target:  5'- gGgcGCGGCGUcgCGGUGUCUGCcgagcgcaauccGCaGGCg -3'
miRNA:   3'- -CauUGCCGCG--GCCACGGGCG------------CGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 41361 0.67 0.277906
Target:  5'- --cACGGCgGCCGGcaauuUGCgCGUGUcGGCg -3'
miRNA:   3'- cauUGCCG-CGGCC-----ACGgGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 39979 0.67 0.271108
Target:  5'- -gAACGGCGUgucuucgucguCGGccUGCgaGCGCUGGUc -3'
miRNA:   3'- caUUGCCGCG-----------GCC--ACGggCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 36057 0.67 0.271108
Target:  5'- gGUGugGGCaGaCCGGUGCgaaccgaCGUGCggUGGCc -3'
miRNA:   3'- -CAUugCCG-C-GGCCACGg------GCGCG--ACCG- -5'
28013 5' -62.1 NC_005887.1 + 34240 0.67 0.264444
Target:  5'- -cAGCGGCGCCucgGCgaGCGC-GGCg -3'
miRNA:   3'- caUUGCCGCGGccaCGggCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 37305 0.67 0.264444
Target:  5'- cGgcGCGGCcauuGCC-GUGCCUuCGUUGGCu -3'
miRNA:   3'- -CauUGCCG----CGGcCACGGGcGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 1944 0.67 0.264444
Target:  5'- cGUGACGGCGaUCGGUGggucgugaaCCCG-GC-GGCc -3'
miRNA:   3'- -CAUUGCCGC-GGCCAC---------GGGCgCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 32738 0.67 0.264444
Target:  5'- gGUAgcGCGGCGCUcGcGUgCGCGCcGGCg -3'
miRNA:   3'- -CAU--UGCCGCGGcCaCGgGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 30921 0.67 0.264444
Target:  5'- --cGCGGCaucGCCuuGUGCCagCGCGCUcGGCg -3'
miRNA:   3'- cauUGCCG---CGGc-CACGG--GCGCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 10316 0.67 0.257914
Target:  5'- ----gGGCGUCGGUGCCC-CGCa--- -3'
miRNA:   3'- cauugCCGCGGCCACGGGcGCGaccg -5'
28013 5' -62.1 NC_005887.1 + 27356 0.67 0.257914
Target:  5'- -gGGCGGCacGCCuGcgGCCUGCGC-GGCc -3'
miRNA:   3'- caUUGCCG--CGGcCa-CGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 28332 0.67 0.257914
Target:  5'- -cGGCGGCgcGCCGGcGgUUGCGgaGGCg -3'
miRNA:   3'- caUUGCCG--CGGCCaCgGGCGCgaCCG- -5'
28013 5' -62.1 NC_005887.1 + 5416 0.67 0.257914
Target:  5'- -gGGCGGCGCCGcagcgaccgGCgcgaccacgCCGCccGCUGGCa -3'
miRNA:   3'- caUUGCCGCGGCca-------CG---------GGCG--CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 32073 0.67 0.257914
Target:  5'- -cGACGuaGCGCaCGGUcuGCCCGUugacCUGGCg -3'
miRNA:   3'- caUUGC--CGCG-GCCA--CGGGCGc---GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.