miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 32073 0.67 0.257914
Target:  5'- -cGACGuaGCGCaCGGUcuGCCCGUugacCUGGCg -3'
miRNA:   3'- caUUGC--CGCG-GCCA--CGGGCGc---GACCG- -5'
28013 5' -62.1 NC_005887.1 + 34240 0.67 0.264444
Target:  5'- -cAGCGGCGCCucgGCgaGCGC-GGCg -3'
miRNA:   3'- caUUGCCGCGGccaCGggCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 17342 0.66 0.284839
Target:  5'- -cGGCGGcCGCCGGcGCgagCUGaCGCUcGGCa -3'
miRNA:   3'- caUUGCC-GCGGCCaCG---GGC-GCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 25832 0.66 0.306457
Target:  5'- ---uCGGCGCCGGcgGCgaCGCGaucGGCc -3'
miRNA:   3'- cauuGCCGCGGCCa-CGg-GCGCga-CCG- -5'
28013 5' -62.1 NC_005887.1 + 32502 0.69 0.189509
Target:  5'- --uGCGGCGCgCGGcguucagguUGgCCGCGCUgaccGGCu -3'
miRNA:   3'- cauUGCCGCG-GCC---------ACgGGCGCGA----CCG- -5'
28013 5' -62.1 NC_005887.1 + 28836 0.68 0.239114
Target:  5'- cGUGGC-GCGCa--UGCCCGUGCcGGCg -3'
miRNA:   3'- -CAUUGcCGCGgccACGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 36057 0.67 0.271108
Target:  5'- gGUGugGGCaGaCCGGUGCgaaccgaCGUGCggUGGCc -3'
miRNA:   3'- -CAUugCCG-C-GGCCACGg------GCGCG--ACCG- -5'
28013 5' -62.1 NC_005887.1 + 28043 0.66 0.306457
Target:  5'- ---uCGGCGUCG--GCCUGCGCUuGCg -3'
miRNA:   3'- cauuGCCGCGGCcaCGGGCGCGAcCG- -5'
28013 5' -62.1 NC_005887.1 + 41616 0.67 0.24525
Target:  5'- aUGGCGGCagcaCCGGUGCUgGUacgagaucaGCUGGUu -3'
miRNA:   3'- cAUUGCCGc---GGCCACGGgCG---------CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 28733 0.66 0.306457
Target:  5'- --uGCGGcCGCCGc-GCgCCGCGCUGccaGCa -3'
miRNA:   3'- cauUGCC-GCGGCcaCG-GGCGCGAC---CG- -5'
28013 5' -62.1 NC_005887.1 + 37305 0.67 0.264444
Target:  5'- cGgcGCGGCcauuGCC-GUGCCUuCGUUGGCu -3'
miRNA:   3'- -CauUGCCG----CGGcCACGGGcGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 28332 0.67 0.257914
Target:  5'- -cGGCGGCgcGCCGGcGgUUGCGgaGGCg -3'
miRNA:   3'- caUUGCCG--CGGCCaCgGGCGCgaCCG- -5'
28013 5' -62.1 NC_005887.1 + 39979 0.67 0.271108
Target:  5'- -gAACGGCGUgucuucgucguCGGccUGCgaGCGCUGGUc -3'
miRNA:   3'- caUUGCCGCG-----------GCC--ACGggCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 745 0.66 0.283442
Target:  5'- -gGGCcGCGCCGGccgccgcaccugGgCCGcCGCUGGCc -3'
miRNA:   3'- caUUGcCGCGGCCa-----------CgGGC-GCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 6328 0.66 0.299114
Target:  5'- ---cCGGCGCCgaGGUGa-CGCuGCUGGUu -3'
miRNA:   3'- cauuGCCGCGG--CCACggGCG-CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 17804 0.66 0.306457
Target:  5'- -cAugGGCGCCcggccgaaGGUGCggCCGCGCgugauGCu -3'
miRNA:   3'- caUugCCGCGG--------CCACG--GGCGCGac---CG- -5'
28013 5' -62.1 NC_005887.1 + 29941 0.7 0.166042
Target:  5'- --cGCGGUGUCGuUGCCC-UGCUGGUa -3'
miRNA:   3'- cauUGCCGCGGCcACGGGcGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 23948 0.69 0.177901
Target:  5'- -cGACGGCGCCGcGgcguagGCCaucggguucgcgaGCGCcGGCg -3'
miRNA:   3'- caUUGCCGCGGC-Ca-----CGGg------------CGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 20799 0.69 0.207091
Target:  5'- cGUAAUuGCGCCGGUcGCCUGCaGCgucgugaauuucccGGCa -3'
miRNA:   3'- -CAUUGcCGCGGCCA-CGGGCG-CGa-------------CCG- -5'
28013 5' -62.1 NC_005887.1 + 27702 0.68 0.233106
Target:  5'- ---cCGGCGaCGGgcaGCaCCGCGCcGGCu -3'
miRNA:   3'- cauuGCCGCgGCCa--CG-GGCGCGaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.