miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 5' -52.5 NC_005887.1 + 24343 0.66 0.771598
Target:  5'- -gCGCGCggcggucccauucgGUCAGGCuguuccagucggugcGGCCGAUgccgGCg -3'
miRNA:   3'- caGCGCG--------------UAGUCCGuu-------------UCGGCUAa---CG- -5'
28014 5' -52.5 NC_005887.1 + 26834 0.66 0.777919
Target:  5'- -gUGCGCGagCGGGCGcgucuGCCGGUaGCc -3'
miRNA:   3'- caGCGCGUa-GUCCGUuu---CGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 23404 0.66 0.777919
Target:  5'- aUCGUGCGUUAuuGGCc--GCCGAcgGCc -3'
miRNA:   3'- cAGCGCGUAGU--CCGuuuCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 9570 0.66 0.777919
Target:  5'- -gCGCGCcgAUCcuGCGcacGAGCCGGcUGCa -3'
miRNA:   3'- caGCGCG--UAGucCGU---UUCGGCUaACG- -5'
28014 5' -52.5 NC_005887.1 + 31012 0.66 0.788321
Target:  5'- cGUgGCGCGgcgCAGGCcacuauucgcAGGCCGcggcUUGCa -3'
miRNA:   3'- -CAgCGCGUa--GUCCGu---------UUCGGCu---AACG- -5'
28014 5' -52.5 NC_005887.1 + 2889 0.66 0.788321
Target:  5'- -aCGCGCuuuUCAGGCAcgcGGCCc-UUGUc -3'
miRNA:   3'- caGCGCGu--AGUCCGUu--UCGGcuAACG- -5'
28014 5' -52.5 NC_005887.1 + 1715 0.66 0.767351
Target:  5'- -gCGCGCucGUCAGuGCcugucuuGCCGAUgUGCg -3'
miRNA:   3'- caGCGCG--UAGUC-CGuuu----CGGCUA-ACG- -5'
28014 5' -52.5 NC_005887.1 + 39203 0.66 0.767351
Target:  5'- -gCGCgGCAUCAGGU--AGUCGAUg-- -3'
miRNA:   3'- caGCG-CGUAGUCCGuuUCGGCUAacg -5'
28014 5' -52.5 NC_005887.1 + 33976 0.66 0.760936
Target:  5'- cGUCGCGCucugcGUCAGGCuuucgcaggcuucGGCCGccagacgGCa -3'
miRNA:   3'- -CAGCGCG-----UAGUCCGuu-----------UCGGCuaa----CG- -5'
28014 5' -52.5 NC_005887.1 + 2687 0.66 0.777919
Target:  5'- -gUGCGCGUgaagcguaCGGGCGGcaagcGGCCGAgccGCg -3'
miRNA:   3'- caGCGCGUA--------GUCCGUU-----UCGGCUaa-CG- -5'
28014 5' -52.5 NC_005887.1 + 29406 0.66 0.760936
Target:  5'- gGUCGCG-AUCAGGCucgacagcucgucGGCCGAguagucgucgGCg -3'
miRNA:   3'- -CAGCGCgUAGUCCGuu-----------UCGGCUaa--------CG- -5'
28014 5' -52.5 NC_005887.1 + 17267 0.66 0.745769
Target:  5'- aUCGUGCcgggcgagacGUCGGGCGgcGCCGcgcGCg -3'
miRNA:   3'- cAGCGCG----------UAGUCCGUuuCGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 24898 0.66 0.75663
Target:  5'- uGUUGCGCGUCGGauucGGGCCGua-GCg -3'
miRNA:   3'- -CAGCGCGUAGUCcgu-UUCGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 19796 0.66 0.745769
Target:  5'- --aGCGUcUCGGGCAu-GUCGAUcGCg -3'
miRNA:   3'- cagCGCGuAGUCCGUuuCGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 25018 0.66 0.745769
Target:  5'- -gUGCGCGUCA-GCAucGCgGAagUGCa -3'
miRNA:   3'- caGCGCGUAGUcCGUuuCGgCUa-ACG- -5'
28014 5' -52.5 NC_005887.1 + 15533 0.66 0.760936
Target:  5'- cUCGCGCAcgcgcaggaugaaauUCagaAGGCGcucGCCGAcUGCa -3'
miRNA:   3'- cAGCGCGU---------------AG---UCCGUuu-CGGCUaACG- -5'
28014 5' -52.5 NC_005887.1 + 26966 0.66 0.75663
Target:  5'- -gCGCGCgAUCAGcGCGgcGUCGAccUGCu -3'
miRNA:   3'- caGCGCG-UAGUC-CGUuuCGGCUa-ACG- -5'
28014 5' -52.5 NC_005887.1 + 5506 0.66 0.745769
Target:  5'- cGUCGCGaucCAGcGCAAGGCUGucgaacUGCu -3'
miRNA:   3'- -CAGCGCguaGUC-CGUUUCGGCua----ACG- -5'
28014 5' -52.5 NC_005887.1 + 8345 0.67 0.72368
Target:  5'- uUCGCGUgccGUCuGGC--GGCCGAagccUGCg -3'
miRNA:   3'- cAGCGCG---UAGuCCGuuUCGGCUa---ACG- -5'
28014 5' -52.5 NC_005887.1 + 28543 0.67 0.70119
Target:  5'- -aCGCGCGcCGGGCu--GCUGAauUUGUa -3'
miRNA:   3'- caGCGCGUaGUCCGuuuCGGCU--AACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.