miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 5' -52.5 NC_005887.1 + 23185 0.67 0.734781
Target:  5'- cGUCGCGC-UC--GCGAucacGGCCGGggGCg -3'
miRNA:   3'- -CAGCGCGuAGucCGUU----UCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 2306 0.67 0.70119
Target:  5'- -aCG-GUAUCGGGCGuAGGCCGGccGCc -3'
miRNA:   3'- caGCgCGUAGUCCGU-UUCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 26198 0.67 0.70119
Target:  5'- cUCGCGCAcUC-GGCGc-GCCGGUgguugGCg -3'
miRNA:   3'- cAGCGCGU-AGuCCGUuuCGGCUAa----CG- -5'
28014 5' -52.5 NC_005887.1 + 14072 0.67 0.70119
Target:  5'- -gCGCGCGcUC-GGCGu-GCCGAUgaUGCu -3'
miRNA:   3'- caGCGCGU-AGuCCGUuuCGGCUA--ACG- -5'
28014 5' -52.5 NC_005887.1 + 40696 0.67 0.712478
Target:  5'- -gCGCGCAcggCuGGCAgGAGCCGAUc-- -3'
miRNA:   3'- caGCGCGUa--GuCCGU-UUCGGCUAacg -5'
28014 5' -52.5 NC_005887.1 + 5836 0.67 0.70119
Target:  5'- gGUCGCGaa--GGGCGAAGCgGA--GCu -3'
miRNA:   3'- -CAGCGCguagUCCGUUUCGgCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 23259 0.67 0.689827
Target:  5'- -gCGCGCAaaAGGCGcAGCucguggCGGUUGCc -3'
miRNA:   3'- caGCGCGUagUCCGUuUCG------GCUAACG- -5'
28014 5' -52.5 NC_005887.1 + 18377 0.67 0.689827
Target:  5'- cUCGCGC-UCGaGCAGugGGCCGAggucgucggUGCg -3'
miRNA:   3'- cAGCGCGuAGUcCGUU--UCGGCUa--------ACG- -5'
28014 5' -52.5 NC_005887.1 + 28543 0.67 0.70119
Target:  5'- -aCGCGCGcCGGGCu--GCUGAauUUGUa -3'
miRNA:   3'- caGCGCGUaGUCCGuuuCGGCU--AACG- -5'
28014 5' -52.5 NC_005887.1 + 15082 0.68 0.643893
Target:  5'- aGUCGUGCcgAUCAuuGGCGAcgcgGGCCGGcgcgcgaugcagUUGCg -3'
miRNA:   3'- -CAGCGCG--UAGU--CCGUU----UCGGCU------------AACG- -5'
28014 5' -52.5 NC_005887.1 + 39644 0.68 0.643893
Target:  5'- cGUCGCGC----GGCucGGCCGcUUGCc -3'
miRNA:   3'- -CAGCGCGuaguCCGuuUCGGCuAACG- -5'
28014 5' -52.5 NC_005887.1 + 23718 0.68 0.63235
Target:  5'- cGUCGacaGCAgCGGGCc--GCCGAUcGCg -3'
miRNA:   3'- -CAGCg--CGUaGUCCGuuuCGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 29720 0.68 0.655424
Target:  5'- cGUCGCGUcgCAGGaucacgcGCCGcgcgUGCa -3'
miRNA:   3'- -CAGCGCGuaGUCCguuu---CGGCua--ACG- -5'
28014 5' -52.5 NC_005887.1 + 37208 0.68 0.63235
Target:  5'- -gCGCGCcgacGUCGGGCAGcgcggucauGCCGAgcuugGCg -3'
miRNA:   3'- caGCGCG----UAGUCCGUUu--------CGGCUaa---CG- -5'
28014 5' -52.5 NC_005887.1 + 40928 0.68 0.620807
Target:  5'- -gCGCGCAccgaguUC-GGCAAcGCCGAgcGCa -3'
miRNA:   3'- caGCGCGU------AGuCCGUUuCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 31198 0.68 0.643893
Target:  5'- -gCGCGCGuagauuUCGGGC---GCCGcgUGCu -3'
miRNA:   3'- caGCGCGU------AGUCCGuuuCGGCuaACG- -5'
28014 5' -52.5 NC_005887.1 + 16023 0.68 0.655424
Target:  5'- -gUGaCGUAUCGGGagccgcaGGAGCCGGUauUGCa -3'
miRNA:   3'- caGC-GCGUAGUCCg------UUUCGGCUA--ACG- -5'
28014 5' -52.5 NC_005887.1 + 40842 0.68 0.666932
Target:  5'- uUCGUGCAgUCGgauccaccGGCGAAGCCGcc-GCg -3'
miRNA:   3'- cAGCGCGU-AGU--------CCGUUUCGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 41038 0.68 0.678404
Target:  5'- -cCGCGCGgugCAGGUcGAGCuCGAgaacaugGCg -3'
miRNA:   3'- caGCGCGUa--GUCCGuUUCG-GCUaa-----CG- -5'
28014 5' -52.5 NC_005887.1 + 18083 0.68 0.655424
Target:  5'- aUCGCGCuAUCcGGCGAcucGCCGug-GCu -3'
miRNA:   3'- cAGCGCG-UAGuCCGUUu--CGGCuaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.