miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 5' -52.5 NC_005887.1 + 15618 0.77 0.222382
Target:  5'- cGUCGCGCAgCAGGCGGccgggcucGCCGAUcaggGCg -3'
miRNA:   3'- -CAGCGCGUaGUCCGUUu-------CGGCUAa---CG- -5'
28014 5' -52.5 NC_005887.1 + 29789 0.74 0.340036
Target:  5'- cGUCGCGCAgcUCGGGCcaguAGCUGGaagucUGCg -3'
miRNA:   3'- -CAGCGCGU--AGUCCGuu--UCGGCUa----ACG- -5'
28014 5' -52.5 NC_005887.1 + 26709 0.72 0.394484
Target:  5'- cGUCGCGCGgccgCGGGCAGcucgacauAGaCCGGgcGCa -3'
miRNA:   3'- -CAGCGCGUa---GUCCGUU--------UC-GGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 11470 0.72 0.413845
Target:  5'- cUCGCGaacaAUCAGGCAGAGCaGGUcuacGCg -3'
miRNA:   3'- cAGCGCg---UAGUCCGUUUCGgCUAa---CG- -5'
28014 5' -52.5 NC_005887.1 + 34377 0.72 0.413845
Target:  5'- -cCGCGUAUCAGaGUgcGGCCGGgcGCg -3'
miRNA:   3'- caGCGCGUAGUC-CGuuUCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 14993 0.71 0.454263
Target:  5'- -cCGCGCAggccgCAGGCGugccgcccGAGCUGAU-GCu -3'
miRNA:   3'- caGCGCGUa----GUCCGU--------UUCGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 14701 0.71 0.485935
Target:  5'- cGUCGCGg--CGGGCG-GGCCGGgcGCg -3'
miRNA:   3'- -CAGCGCguaGUCCGUuUCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 40379 0.7 0.507623
Target:  5'- cGUCGCGCGcgaggaaaUCGugaugcccGGCAcGGCCGAcgUGCc -3'
miRNA:   3'- -CAGCGCGU--------AGU--------CCGUuUCGGCUa-ACG- -5'
28014 5' -52.5 NC_005887.1 + 20542 0.7 0.52971
Target:  5'- ---uUGCGUCGGGCGcAGCCGGauucggUUGCa -3'
miRNA:   3'- cagcGCGUAGUCCGUuUCGGCU------AACG- -5'
28014 5' -52.5 NC_005887.1 + 11098 0.7 0.540886
Target:  5'- cGUgGCGCAUCGGcuggugcgcGCGAAGCUGGccgagGCg -3'
miRNA:   3'- -CAgCGCGUAGUC---------CGUUUCGGCUaa---CG- -5'
28014 5' -52.5 NC_005887.1 + 40020 0.7 0.540886
Target:  5'- -gUGCGCAUCAuGGCGcGGCuCGAggcgGCc -3'
miRNA:   3'- caGCGCGUAGU-CCGUuUCG-GCUaa--CG- -5'
28014 5' -52.5 NC_005887.1 + 40736 0.69 0.563464
Target:  5'- gGUCGCcgcccGCGUCgAGGCGAucGCCGuugGCg -3'
miRNA:   3'- -CAGCG-----CGUAG-UCCGUUu-CGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 16252 0.69 0.597763
Target:  5'- --aGCGCA-CGGGCAccgucgccGAGCUGAU-GCa -3'
miRNA:   3'- cagCGCGUaGUCCGU--------UUCGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 14519 0.69 0.609274
Target:  5'- gGUC-CGCuugCAGGCGcGGCCGucgGCg -3'
miRNA:   3'- -CAGcGCGua-GUCCGUuUCGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 24457 0.71 0.496726
Target:  5'- -aCGCaGCAUCAGGCcguuggcgcGGCCGAUcGUg -3'
miRNA:   3'- caGCG-CGUAGUCCGuu-------UCGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 2306 0.67 0.70119
Target:  5'- -aCG-GUAUCGGGCGuAGGCCGGccGCc -3'
miRNA:   3'- caGCgCGUAGUCCGU-UUCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 18377 0.67 0.689827
Target:  5'- cUCGCGC-UCGaGCAGugGGCCGAggucgucggUGCg -3'
miRNA:   3'- cAGCGCGuAGUcCGUU--UCGGCUa--------ACG- -5'
28014 5' -52.5 NC_005887.1 + 18083 0.68 0.655424
Target:  5'- aUCGCGCuAUCcGGCGAcucGCCGug-GCu -3'
miRNA:   3'- cAGCGCG-UAGuCCGUUu--CGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 39644 0.68 0.643893
Target:  5'- cGUCGCGC----GGCucGGCCGcUUGCc -3'
miRNA:   3'- -CAGCGCGuaguCCGuuUCGGCuAACG- -5'
28014 5' -52.5 NC_005887.1 + 15082 0.68 0.643893
Target:  5'- aGUCGUGCcgAUCAuuGGCGAcgcgGGCCGGcgcgcgaugcagUUGCg -3'
miRNA:   3'- -CAGCGCG--UAGU--CCGUU----UCGGCU------------AACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.