Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28014 | 5' | -52.5 | NC_005887.1 | + | 3023 | 0.74 | 0.314927 |
Target: 5'- --aGCGCcgCGGGCAAAGCCa--UGCu -3' miRNA: 3'- cagCGCGuaGUCCGUUUCGGcuaACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 29789 | 0.74 | 0.340036 |
Target: 5'- cGUCGCGCAgcUCGGGCcaguAGCUGGaagucUGCg -3' miRNA: 3'- -CAGCGCGU--AGUCCGuu--UCGGCUa----ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 26709 | 0.72 | 0.394484 |
Target: 5'- cGUCGCGCGgccgCGGGCAGcucgacauAGaCCGGgcGCa -3' miRNA: 3'- -CAGCGCGUa---GUCCGUU--------UC-GGCUaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 11470 | 0.72 | 0.413845 |
Target: 5'- cUCGCGaacaAUCAGGCAGAGCaGGUcuacGCg -3' miRNA: 3'- cAGCGCg---UAGUCCGUUUCGgCUAa---CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 34377 | 0.72 | 0.413845 |
Target: 5'- -cCGCGUAUCAGaGUgcGGCCGGgcGCg -3' miRNA: 3'- caGCGCGUAGUC-CGuuUCGGCUaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 14993 | 0.71 | 0.454263 |
Target: 5'- -cCGCGCAggccgCAGGCGugccgcccGAGCUGAU-GCu -3' miRNA: 3'- caGCGCGUa----GUCCGU--------UUCGGCUAaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 14701 | 0.71 | 0.485935 |
Target: 5'- cGUCGCGg--CGGGCG-GGCCGGgcGCg -3' miRNA: 3'- -CAGCGCguaGUCCGUuUCGGCUaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 24457 | 0.71 | 0.496726 |
Target: 5'- -aCGCaGCAUCAGGCcguuggcgcGGCCGAUcGUg -3' miRNA: 3'- caGCG-CGUAGUCCGuu-------UCGGCUAaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 14519 | 0.69 | 0.609274 |
Target: 5'- gGUC-CGCuugCAGGCGcGGCCGucgGCg -3' miRNA: 3'- -CAGcGCGua-GUCCGUuUCGGCuaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 16252 | 0.69 | 0.597763 |
Target: 5'- --aGCGCA-CGGGCAccgucgccGAGCUGAU-GCa -3' miRNA: 3'- cagCGCGUaGUCCGU--------UUCGGCUAaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 40736 | 0.69 | 0.563464 |
Target: 5'- gGUCGCcgcccGCGUCgAGGCGAucGCCGuugGCg -3' miRNA: 3'- -CAGCG-----CGUAG-UCCGUUu-CGGCuaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 40020 | 0.7 | 0.540886 |
Target: 5'- -gUGCGCAUCAuGGCGcGGCuCGAggcgGCc -3' miRNA: 3'- caGCGCGUAGU-CCGUuUCG-GCUaa--CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 11098 | 0.7 | 0.540886 |
Target: 5'- cGUgGCGCAUCGGcuggugcgcGCGAAGCUGGccgagGCg -3' miRNA: 3'- -CAgCGCGUAGUC---------CGUUUCGGCUaa---CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 20542 | 0.7 | 0.52971 |
Target: 5'- ---uUGCGUCGGGCGcAGCCGGauucggUUGCa -3' miRNA: 3'- cagcGCGUAGUCCGUuUCGGCU------AACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 40379 | 0.7 | 0.507623 |
Target: 5'- cGUCGCGCGcgaggaaaUCGugaugcccGGCAcGGCCGAcgUGCc -3' miRNA: 3'- -CAGCGCGU--------AGU--------CCGUuUCGGCUa-ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 32739 | 1.13 | 0.000668 |
Target: 5'- gGUCGCGCAUCAGGCAAAGCCGAUUGCg -3' miRNA: 3'- -CAGCGCGUAGUCCGUUUCGGCUAACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 23404 | 0.66 | 0.777919 |
Target: 5'- aUCGUGCGUUAuuGGCc--GCCGAcgGCc -3' miRNA: 3'- cAGCGCGUAGU--CCGuuuCGGCUaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 9570 | 0.66 | 0.777919 |
Target: 5'- -gCGCGCcgAUCcuGCGcacGAGCCGGcUGCa -3' miRNA: 3'- caGCGCG--UAGucCGU---UUCGGCUaACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 24343 | 0.66 | 0.771598 |
Target: 5'- -gCGCGCggcggucccauucgGUCAGGCuguuccagucggugcGGCCGAUgccgGCg -3' miRNA: 3'- caGCGCG--------------UAGUCCGuu-------------UCGGCUAa---CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 1715 | 0.66 | 0.767351 |
Target: 5'- -gCGCGCucGUCAGuGCcugucuuGCCGAUgUGCg -3' miRNA: 3'- caGCGCG--UAGUC-CGuuu----CGGCUA-ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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