Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28014 | 5' | -52.5 | NC_005887.1 | + | 28800 | 0.71 | 0.475258 |
Target: 5'- cUCGgGCggCAGcGCAucGCCGAUcGCa -3' miRNA: 3'- cAGCgCGuaGUC-CGUuuCGGCUAaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 15082 | 0.68 | 0.643893 |
Target: 5'- aGUCGUGCcgAUCAuuGGCGAcgcgGGCCGGcgcgcgaugcagUUGCg -3' miRNA: 3'- -CAGCGCG--UAGU--CCGUU----UCGGCU------------AACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 24898 | 0.66 | 0.75663 |
Target: 5'- uGUUGCGCGUCGGauucGGGCCGua-GCg -3' miRNA: 3'- -CAGCGCGUAGUCcgu-UUCGGCuaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 4149 | 0.7 | 0.55214 |
Target: 5'- -gCGCGCGacuggcUCGGGUAuuGAGCCGGccaUGCu -3' miRNA: 3'- caGCGCGU------AGUCCGU--UUCGGCUa--ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 20195 | 0.71 | 0.454263 |
Target: 5'- uUUGCGCGUCAGcccuucGCcgauGAAGCCGAgcGCg -3' miRNA: 3'- cAGCGCGUAGUC------CG----UUUCGGCUaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 35552 | 0.7 | 0.517516 |
Target: 5'- aGUCGCGCAgc--GUGAGGCCGAUgucccacuuguagUGCg -3' miRNA: 3'- -CAGCGCGUagucCGUUUCGGCUA-------------ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 15533 | 0.66 | 0.760936 |
Target: 5'- cUCGCGCAcgcgcaggaugaaauUCagaAGGCGcucGCCGAcUGCa -3' miRNA: 3'- cAGCGCGU---------------AG---UCCGUuu-CGGCUaACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 33976 | 0.66 | 0.760936 |
Target: 5'- cGUCGCGCucugcGUCAGGCuuucgcaggcuucGGCCGccagacgGCa -3' miRNA: 3'- -CAGCGCG-----UAGUCCGuu-----------UCGGCuaa----CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 25018 | 0.66 | 0.745769 |
Target: 5'- -gUGCGCGUCA-GCAucGCgGAagUGCa -3' miRNA: 3'- caGCGCGUAGUcCGUuuCGgCUa-ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 37208 | 0.68 | 0.63235 |
Target: 5'- -gCGCGCcgacGUCGGGCAGcgcggucauGCCGAgcuugGCg -3' miRNA: 3'- caGCGCG----UAGUCCGUUu--------CGGCUaa---CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 14993 | 0.71 | 0.454263 |
Target: 5'- -cCGCGCAggccgCAGGCGugccgcccGAGCUGAU-GCu -3' miRNA: 3'- caGCGCGUa----GUCCGU--------UUCGGCUAaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 23185 | 0.67 | 0.734781 |
Target: 5'- cGUCGCGC-UC--GCGAucacGGCCGGggGCg -3' miRNA: 3'- -CAGCGCGuAGucCGUU----UCGGCUaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 16252 | 0.69 | 0.597763 |
Target: 5'- --aGCGCA-CGGGCAccgucgccGAGCUGAU-GCa -3' miRNA: 3'- cagCGCGUaGUCCGU--------UUCGGCUAaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 40736 | 0.69 | 0.563464 |
Target: 5'- gGUCGCcgcccGCGUCgAGGCGAucGCCGuugGCg -3' miRNA: 3'- -CAGCG-----CGUAG-UCCGUUu-CGGCuaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 40020 | 0.7 | 0.540886 |
Target: 5'- -gUGCGCAUCAuGGCGcGGCuCGAggcgGCc -3' miRNA: 3'- caGCGCGUAGU-CCGUuUCG-GCUaa--CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 5836 | 0.67 | 0.70119 |
Target: 5'- gGUCGCGaa--GGGCGAAGCgGA--GCu -3' miRNA: 3'- -CAGCGCguagUCCGUUUCGgCUaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 28543 | 0.67 | 0.70119 |
Target: 5'- -aCGCGCGcCGGGCu--GCUGAauUUGUa -3' miRNA: 3'- caGCGCGUaGUCCGuuuCGGCU--AACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 40696 | 0.67 | 0.712478 |
Target: 5'- -gCGCGCAcggCuGGCAgGAGCCGAUc-- -3' miRNA: 3'- caGCGCGUa--GuCCGU-UUCGGCUAacg -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 14194 | 0.67 | 0.712478 |
Target: 5'- -aCGCGCuGUCGGGCGcGGCCucgGAcaggGCg -3' miRNA: 3'- caGCGCG-UAGUCCGUuUCGG---CUaa--CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 8345 | 0.67 | 0.72368 |
Target: 5'- uUCGCGUgccGUCuGGC--GGCCGAagccUGCg -3' miRNA: 3'- cAGCGCG---UAGuCCGuuUCGGCUa---ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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