miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 5' -52.5 NC_005887.1 + 11470 0.72 0.413845
Target:  5'- cUCGCGaacaAUCAGGCAGAGCaGGUcuacGCg -3'
miRNA:   3'- cAGCGCg---UAGUCCGUUUCGgCUAa---CG- -5'
28014 5' -52.5 NC_005887.1 + 29789 0.74 0.340036
Target:  5'- cGUCGCGCAgcUCGGGCcaguAGCUGGaagucUGCg -3'
miRNA:   3'- -CAGCGCGU--AGUCCGuu--UCGGCUa----ACG- -5'
28014 5' -52.5 NC_005887.1 + 14519 0.69 0.609274
Target:  5'- gGUC-CGCuugCAGGCGcGGCCGucgGCg -3'
miRNA:   3'- -CAGcGCGua-GUCCGUuUCGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 296 0.69 0.609274
Target:  5'- cGUgGCGUgAUCA-GCGAGGCCGcggUGCg -3'
miRNA:   3'- -CAgCGCG-UAGUcCGUUUCGGCua-ACG- -5'
28014 5' -52.5 NC_005887.1 + 40928 0.68 0.620807
Target:  5'- -gCGCGCAccgaguUC-GGCAAcGCCGAgcGCa -3'
miRNA:   3'- caGCGCGU------AGuCCGUUuCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 40696 0.67 0.712478
Target:  5'- -gCGCGCAcggCuGGCAgGAGCCGAUc-- -3'
miRNA:   3'- caGCGCGUa--GuCCGU-UUCGGCUAacg -5'
28014 5' -52.5 NC_005887.1 + 14194 0.67 0.712478
Target:  5'- -aCGCGCuGUCGGGCGcGGCCucgGAcaggGCg -3'
miRNA:   3'- caGCGCG-UAGUCCGUuUCGG---CUaa--CG- -5'
28014 5' -52.5 NC_005887.1 + 8345 0.67 0.72368
Target:  5'- uUCGCGUgccGUCuGGC--GGCCGAagccUGCg -3'
miRNA:   3'- cAGCGCG---UAGuCCGuuUCGGCUa---ACG- -5'
28014 5' -52.5 NC_005887.1 + 23185 0.67 0.734781
Target:  5'- cGUCGCGC-UC--GCGAucacGGCCGGggGCg -3'
miRNA:   3'- -CAGCGCGuAGucCGUU----UCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 5836 0.67 0.70119
Target:  5'- gGUCGCGaa--GGGCGAAGCgGA--GCu -3'
miRNA:   3'- -CAGCGCguagUCCGUUUCGgCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 29406 0.66 0.760936
Target:  5'- gGUCGCG-AUCAGGCucgacagcucgucGGCCGAguagucgucgGCg -3'
miRNA:   3'- -CAGCGCgUAGUCCGuu-----------UCGGCUaa--------CG- -5'
28014 5' -52.5 NC_005887.1 + 2687 0.66 0.777919
Target:  5'- -gUGCGCGUgaagcguaCGGGCGGcaagcGGCCGAgccGCg -3'
miRNA:   3'- caGCGCGUA--------GUCCGUU-----UCGGCUaa-CG- -5'
28014 5' -52.5 NC_005887.1 + 26834 0.66 0.777919
Target:  5'- -gUGCGCGagCGGGCGcgucuGCCGGUaGCc -3'
miRNA:   3'- caGCGCGUa-GUCCGUuu---CGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 31012 0.66 0.788321
Target:  5'- cGUgGCGCGgcgCAGGCcacuauucgcAGGCCGcggcUUGCa -3'
miRNA:   3'- -CAgCGCGUa--GUCCGu---------UUCGGCu---AACG- -5'
28014 5' -52.5 NC_005887.1 + 41038 0.68 0.678404
Target:  5'- -cCGCGCGgugCAGGUcGAGCuCGAgaacaugGCg -3'
miRNA:   3'- caGCGCGUa--GUCCGuUUCG-GCUaa-----CG- -5'
28014 5' -52.5 NC_005887.1 + 23259 0.67 0.689827
Target:  5'- -gCGCGCAaaAGGCGcAGCucguggCGGUUGCc -3'
miRNA:   3'- caGCGCGUagUCCGUuUCG------GCUAACG- -5'
28014 5' -52.5 NC_005887.1 + 40842 0.68 0.666932
Target:  5'- uUCGUGCAgUCGgauccaccGGCGAAGCCGcc-GCg -3'
miRNA:   3'- cAGCGCGU-AGU--------CCGUUUCGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 29720 0.68 0.655424
Target:  5'- cGUCGCGUcgCAGGaucacgcGCCGcgcgUGCa -3'
miRNA:   3'- -CAGCGCGuaGUCCguuu---CGGCua--ACG- -5'
28014 5' -52.5 NC_005887.1 + 16023 0.68 0.655424
Target:  5'- -gUGaCGUAUCGGGagccgcaGGAGCCGGUauUGCa -3'
miRNA:   3'- caGC-GCGUAGUCCg------UUUCGGCUA--ACG- -5'
28014 5' -52.5 NC_005887.1 + 31198 0.68 0.643893
Target:  5'- -gCGCGCGuagauuUCGGGC---GCCGcgUGCu -3'
miRNA:   3'- caGCGCGU------AGUCCGuuuCGGCuaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.