miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 5' -52.5 NC_005887.1 + 15082 0.68 0.643893
Target:  5'- aGUCGUGCcgAUCAuuGGCGAcgcgGGCCGGcgcgcgaugcagUUGCg -3'
miRNA:   3'- -CAGCGCG--UAGU--CCGUU----UCGGCU------------AACG- -5'
28014 5' -52.5 NC_005887.1 + 37208 0.68 0.63235
Target:  5'- -gCGCGCcgacGUCGGGCAGcgcggucauGCCGAgcuugGCg -3'
miRNA:   3'- caGCGCG----UAGUCCGUUu--------CGGCUaa---CG- -5'
28014 5' -52.5 NC_005887.1 + 23718 0.68 0.63235
Target:  5'- cGUCGacaGCAgCGGGCc--GCCGAUcGCg -3'
miRNA:   3'- -CAGCg--CGUaGUCCGuuuCGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 38076 0.69 0.609274
Target:  5'- cUCGCGCGcgaucaUCGGGCcGAGCaguucaGAcUGCg -3'
miRNA:   3'- cAGCGCGU------AGUCCGuUUCGg-----CUaACG- -5'
28014 5' -52.5 NC_005887.1 + 4149 0.7 0.55214
Target:  5'- -gCGCGCGacuggcUCGGGUAuuGAGCCGGccaUGCu -3'
miRNA:   3'- caGCGCGU------AGUCCGU--UUCGGCUa--ACG- -5'
28014 5' -52.5 NC_005887.1 + 2809 0.7 0.55214
Target:  5'- cGUCGCGCGgauUgGGGUAcaGAGCCGGcgccaguuggUGCg -3'
miRNA:   3'- -CAGCGCGU---AgUCCGU--UUCGGCUa---------ACG- -5'
28014 5' -52.5 NC_005887.1 + 504 0.7 0.51862
Target:  5'- -aCGaGCAUCAGGCGccGCCaGAUcGCg -3'
miRNA:   3'- caGCgCGUAGUCCGUuuCGG-CUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 5506 0.66 0.745769
Target:  5'- cGUCGCGaucCAGcGCAAGGCUGucgaacUGCu -3'
miRNA:   3'- -CAGCGCguaGUC-CGUUUCGGCua----ACG- -5'
28014 5' -52.5 NC_005887.1 + 26198 0.67 0.70119
Target:  5'- cUCGCGCAcUC-GGCGc-GCCGGUgguugGCg -3'
miRNA:   3'- cAGCGCGU-AGuCCGUuuCGGCUAa----CG- -5'
28014 5' -52.5 NC_005887.1 + 23404 0.66 0.777919
Target:  5'- aUCGUGCGUUAuuGGCc--GCCGAcgGCc -3'
miRNA:   3'- cAGCGCGUAGU--CCGuuuCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 9570 0.66 0.777919
Target:  5'- -gCGCGCcgAUCcuGCGcacGAGCCGGcUGCa -3'
miRNA:   3'- caGCGCG--UAGucCGU---UUCGGCUaACG- -5'
28014 5' -52.5 NC_005887.1 + 24343 0.66 0.771598
Target:  5'- -gCGCGCggcggucccauucgGUCAGGCuguuccagucggugcGGCCGAUgccgGCg -3'
miRNA:   3'- caGCGCG--------------UAGUCCGuu-------------UCGGCUAa---CG- -5'
28014 5' -52.5 NC_005887.1 + 1715 0.66 0.767351
Target:  5'- -gCGCGCucGUCAGuGCcugucuuGCCGAUgUGCg -3'
miRNA:   3'- caGCGCG--UAGUC-CGuuu----CGGCUA-ACG- -5'
28014 5' -52.5 NC_005887.1 + 39203 0.66 0.767351
Target:  5'- -gCGCgGCAUCAGGU--AGUCGAUg-- -3'
miRNA:   3'- caGCG-CGUAGUCCGuuUCGGCUAacg -5'
28014 5' -52.5 NC_005887.1 + 33976 0.66 0.760936
Target:  5'- cGUCGCGCucugcGUCAGGCuuucgcaggcuucGGCCGccagacgGCa -3'
miRNA:   3'- -CAGCGCG-----UAGUCCGuu-----------UCGGCuaa----CG- -5'
28014 5' -52.5 NC_005887.1 + 15533 0.66 0.760936
Target:  5'- cUCGCGCAcgcgcaggaugaaauUCagaAGGCGcucGCCGAcUGCa -3'
miRNA:   3'- cAGCGCGU---------------AG---UCCGUuu-CGGCUaACG- -5'
28014 5' -52.5 NC_005887.1 + 24898 0.66 0.75663
Target:  5'- uGUUGCGCGUCGGauucGGGCCGua-GCg -3'
miRNA:   3'- -CAGCGCGUAGUCcgu-UUCGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 26966 0.66 0.75663
Target:  5'- -gCGCGCgAUCAGcGCGgcGUCGAccUGCu -3'
miRNA:   3'- caGCGCG-UAGUC-CGUuuCGGCUa-ACG- -5'
28014 5' -52.5 NC_005887.1 + 25018 0.66 0.745769
Target:  5'- -gUGCGCGUCA-GCAucGCgGAagUGCa -3'
miRNA:   3'- caGCGCGUAGUcCGUuuCGgCUa-ACG- -5'
28014 5' -52.5 NC_005887.1 + 19796 0.66 0.745769
Target:  5'- --aGCGUcUCGGGCAu-GUCGAUcGCg -3'
miRNA:   3'- cagCGCGuAGUCCGUuuCGGCUAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.