miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 5' -52.5 NC_005887.1 + 15082 0.68 0.643893
Target:  5'- aGUCGUGCcgAUCAuuGGCGAcgcgGGCCGGcgcgcgaugcagUUGCg -3'
miRNA:   3'- -CAGCGCG--UAGU--CCGUU----UCGGCU------------AACG- -5'
28014 5' -52.5 NC_005887.1 + 15533 0.66 0.760936
Target:  5'- cUCGCGCAcgcgcaggaugaaauUCagaAGGCGcucGCCGAcUGCa -3'
miRNA:   3'- cAGCGCGU---------------AG---UCCGUuu-CGGCUaACG- -5'
28014 5' -52.5 NC_005887.1 + 15618 0.77 0.222382
Target:  5'- cGUCGCGCAgCAGGCGGccgggcucGCCGAUcaggGCg -3'
miRNA:   3'- -CAGCGCGUaGUCCGUUu-------CGGCUAa---CG- -5'
28014 5' -52.5 NC_005887.1 + 16023 0.68 0.655424
Target:  5'- -gUGaCGUAUCGGGagccgcaGGAGCCGGUauUGCa -3'
miRNA:   3'- caGC-GCGUAGUCCg------UUUCGGCUA--ACG- -5'
28014 5' -52.5 NC_005887.1 + 16252 0.69 0.597763
Target:  5'- --aGCGCA-CGGGCAccgucgccGAGCUGAU-GCa -3'
miRNA:   3'- cagCGCGUaGUCCGU--------UUCGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 17267 0.66 0.745769
Target:  5'- aUCGUGCcgggcgagacGUCGGGCGgcGCCGcgcGCg -3'
miRNA:   3'- cAGCGCG----------UAGUCCGUuuCGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 18083 0.68 0.655424
Target:  5'- aUCGCGCuAUCcGGCGAcucGCCGug-GCu -3'
miRNA:   3'- cAGCGCG-UAGuCCGUUu--CGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 18377 0.67 0.689827
Target:  5'- cUCGCGC-UCGaGCAGugGGCCGAggucgucggUGCg -3'
miRNA:   3'- cAGCGCGuAGUcCGUU--UCGGCUa--------ACG- -5'
28014 5' -52.5 NC_005887.1 + 19796 0.66 0.745769
Target:  5'- --aGCGUcUCGGGCAu-GUCGAUcGCg -3'
miRNA:   3'- cagCGCGuAGUCCGUuuCGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 20195 0.71 0.454263
Target:  5'- uUUGCGCGUCAGcccuucGCcgauGAAGCCGAgcGCg -3'
miRNA:   3'- cAGCGCGUAGUC------CG----UUUCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 20542 0.7 0.52971
Target:  5'- ---uUGCGUCGGGCGcAGCCGGauucggUUGCa -3'
miRNA:   3'- cagcGCGUAGUCCGUuUCGGCU------AACG- -5'
28014 5' -52.5 NC_005887.1 + 23185 0.67 0.734781
Target:  5'- cGUCGCGC-UC--GCGAucacGGCCGGggGCg -3'
miRNA:   3'- -CAGCGCGuAGucCGUU----UCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 23259 0.67 0.689827
Target:  5'- -gCGCGCAaaAGGCGcAGCucguggCGGUUGCc -3'
miRNA:   3'- caGCGCGUagUCCGUuUCG------GCUAACG- -5'
28014 5' -52.5 NC_005887.1 + 23404 0.66 0.777919
Target:  5'- aUCGUGCGUUAuuGGCc--GCCGAcgGCc -3'
miRNA:   3'- cAGCGCGUAGU--CCGuuuCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 23718 0.68 0.63235
Target:  5'- cGUCGacaGCAgCGGGCc--GCCGAUcGCg -3'
miRNA:   3'- -CAGCg--CGUaGUCCGuuuCGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 24343 0.66 0.771598
Target:  5'- -gCGCGCggcggucccauucgGUCAGGCuguuccagucggugcGGCCGAUgccgGCg -3'
miRNA:   3'- caGCGCG--------------UAGUCCGuu-------------UCGGCUAa---CG- -5'
28014 5' -52.5 NC_005887.1 + 24457 0.71 0.496726
Target:  5'- -aCGCaGCAUCAGGCcguuggcgcGGCCGAUcGUg -3'
miRNA:   3'- caGCG-CGUAGUCCGuu-------UCGGCUAaCG- -5'
28014 5' -52.5 NC_005887.1 + 24898 0.66 0.75663
Target:  5'- uGUUGCGCGUCGGauucGGGCCGua-GCg -3'
miRNA:   3'- -CAGCGCGUAGUCcgu-UUCGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 25018 0.66 0.745769
Target:  5'- -gUGCGCGUCA-GCAucGCgGAagUGCa -3'
miRNA:   3'- caGCGCGUAGUcCGUuuCGgCUa-ACG- -5'
28014 5' -52.5 NC_005887.1 + 26198 0.67 0.70119
Target:  5'- cUCGCGCAcUC-GGCGc-GCCGGUgguugGCg -3'
miRNA:   3'- cAGCGCGU-AGuCCGUuuCGGCUAa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.