Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28014 | 5' | -52.5 | NC_005887.1 | + | 296 | 0.69 | 0.609274 |
Target: 5'- cGUgGCGUgAUCA-GCGAGGCCGcggUGCg -3' miRNA: 3'- -CAgCGCG-UAGUcCGUUUCGGCua-ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 504 | 0.7 | 0.51862 |
Target: 5'- -aCGaGCAUCAGGCGccGCCaGAUcGCg -3' miRNA: 3'- caGCgCGUAGUCCGUuuCGG-CUAaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 1715 | 0.66 | 0.767351 |
Target: 5'- -gCGCGCucGUCAGuGCcugucuuGCCGAUgUGCg -3' miRNA: 3'- caGCGCG--UAGUC-CGuuu----CGGCUA-ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 2306 | 0.67 | 0.70119 |
Target: 5'- -aCG-GUAUCGGGCGuAGGCCGGccGCc -3' miRNA: 3'- caGCgCGUAGUCCGU-UUCGGCUaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 2687 | 0.66 | 0.777919 |
Target: 5'- -gUGCGCGUgaagcguaCGGGCGGcaagcGGCCGAgccGCg -3' miRNA: 3'- caGCGCGUA--------GUCCGUU-----UCGGCUaa-CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 2809 | 0.7 | 0.55214 |
Target: 5'- cGUCGCGCGgauUgGGGUAcaGAGCCGGcgccaguuggUGCg -3' miRNA: 3'- -CAGCGCGU---AgUCCGU--UUCGGCUa---------ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 2889 | 0.66 | 0.788321 |
Target: 5'- -aCGCGCuuuUCAGGCAcgcGGCCc-UUGUc -3' miRNA: 3'- caGCGCGu--AGUCCGUu--UCGGcuAACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 3023 | 0.74 | 0.314927 |
Target: 5'- --aGCGCcgCGGGCAAAGCCa--UGCu -3' miRNA: 3'- cagCGCGuaGUCCGUUUCGGcuaACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 4149 | 0.7 | 0.55214 |
Target: 5'- -gCGCGCGacuggcUCGGGUAuuGAGCCGGccaUGCu -3' miRNA: 3'- caGCGCGU------AGUCCGU--UUCGGCUa--ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 5506 | 0.66 | 0.745769 |
Target: 5'- cGUCGCGaucCAGcGCAAGGCUGucgaacUGCu -3' miRNA: 3'- -CAGCGCguaGUC-CGUUUCGGCua----ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 5836 | 0.67 | 0.70119 |
Target: 5'- gGUCGCGaa--GGGCGAAGCgGA--GCu -3' miRNA: 3'- -CAGCGCguagUCCGUUUCGgCUaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 8345 | 0.67 | 0.72368 |
Target: 5'- uUCGCGUgccGUCuGGC--GGCCGAagccUGCg -3' miRNA: 3'- cAGCGCG---UAGuCCGuuUCGGCUa---ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 9570 | 0.66 | 0.777919 |
Target: 5'- -gCGCGCcgAUCcuGCGcacGAGCCGGcUGCa -3' miRNA: 3'- caGCGCG--UAGucCGU---UUCGGCUaACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 11098 | 0.7 | 0.540886 |
Target: 5'- cGUgGCGCAUCGGcuggugcgcGCGAAGCUGGccgagGCg -3' miRNA: 3'- -CAgCGCGUAGUC---------CGUUUCGGCUaa---CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 11470 | 0.72 | 0.413845 |
Target: 5'- cUCGCGaacaAUCAGGCAGAGCaGGUcuacGCg -3' miRNA: 3'- cAGCGCg---UAGUCCGUUUCGgCUAa---CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 14072 | 0.67 | 0.70119 |
Target: 5'- -gCGCGCGcUC-GGCGu-GCCGAUgaUGCu -3' miRNA: 3'- caGCGCGU-AGuCCGUuuCGGCUA--ACG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 14194 | 0.67 | 0.712478 |
Target: 5'- -aCGCGCuGUCGGGCGcGGCCucgGAcaggGCg -3' miRNA: 3'- caGCGCG-UAGUCCGUuUCGG---CUaa--CG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 14519 | 0.69 | 0.609274 |
Target: 5'- gGUC-CGCuugCAGGCGcGGCCGucgGCg -3' miRNA: 3'- -CAGcGCGua-GUCCGUuUCGGCuaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 14701 | 0.71 | 0.485935 |
Target: 5'- cGUCGCGg--CGGGCG-GGCCGGgcGCg -3' miRNA: 3'- -CAGCGCguaGUCCGUuUCGGCUaaCG- -5' |
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28014 | 5' | -52.5 | NC_005887.1 | + | 14993 | 0.71 | 0.454263 |
Target: 5'- -cCGCGCAggccgCAGGCGugccgcccGAGCUGAU-GCu -3' miRNA: 3'- caGCGCGUa----GUCCGU--------UUCGGCUAaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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