miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28014 5' -52.5 NC_005887.1 + 41038 0.68 0.678404
Target:  5'- -cCGCGCGgugCAGGUcGAGCuCGAgaacaugGCg -3'
miRNA:   3'- caGCGCGUa--GUCCGuUUCG-GCUaa-----CG- -5'
28014 5' -52.5 NC_005887.1 + 40928 0.68 0.620807
Target:  5'- -gCGCGCAccgaguUC-GGCAAcGCCGAgcGCa -3'
miRNA:   3'- caGCGCGU------AGuCCGUUuCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 40842 0.68 0.666932
Target:  5'- uUCGUGCAgUCGgauccaccGGCGAAGCCGcc-GCg -3'
miRNA:   3'- cAGCGCGU-AGU--------CCGUUUCGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 40736 0.69 0.563464
Target:  5'- gGUCGCcgcccGCGUCgAGGCGAucGCCGuugGCg -3'
miRNA:   3'- -CAGCG-----CGUAG-UCCGUUu-CGGCuaaCG- -5'
28014 5' -52.5 NC_005887.1 + 40696 0.67 0.712478
Target:  5'- -gCGCGCAcggCuGGCAgGAGCCGAUc-- -3'
miRNA:   3'- caGCGCGUa--GuCCGU-UUCGGCUAacg -5'
28014 5' -52.5 NC_005887.1 + 40379 0.7 0.507623
Target:  5'- cGUCGCGCGcgaggaaaUCGugaugcccGGCAcGGCCGAcgUGCc -3'
miRNA:   3'- -CAGCGCGU--------AGU--------CCGUuUCGGCUa-ACG- -5'
28014 5' -52.5 NC_005887.1 + 40020 0.7 0.540886
Target:  5'- -gUGCGCAUCAuGGCGcGGCuCGAggcgGCc -3'
miRNA:   3'- caGCGCGUAGU-CCGUuUCG-GCUaa--CG- -5'
28014 5' -52.5 NC_005887.1 + 39644 0.68 0.643893
Target:  5'- cGUCGCGC----GGCucGGCCGcUUGCc -3'
miRNA:   3'- -CAGCGCGuaguCCGuuUCGGCuAACG- -5'
28014 5' -52.5 NC_005887.1 + 39203 0.66 0.767351
Target:  5'- -gCGCgGCAUCAGGU--AGUCGAUg-- -3'
miRNA:   3'- caGCG-CGUAGUCCGuuUCGGCUAacg -5'
28014 5' -52.5 NC_005887.1 + 38076 0.69 0.609274
Target:  5'- cUCGCGCGcgaucaUCGGGCcGAGCaguucaGAcUGCg -3'
miRNA:   3'- cAGCGCGU------AGUCCGuUUCGg-----CUaACG- -5'
28014 5' -52.5 NC_005887.1 + 37208 0.68 0.63235
Target:  5'- -gCGCGCcgacGUCGGGCAGcgcggucauGCCGAgcuugGCg -3'
miRNA:   3'- caGCGCG----UAGUCCGUUu--------CGGCUaa---CG- -5'
28014 5' -52.5 NC_005887.1 + 35552 0.7 0.517516
Target:  5'- aGUCGCGCAgc--GUGAGGCCGAUgucccacuuguagUGCg -3'
miRNA:   3'- -CAGCGCGUagucCGUUUCGGCUA-------------ACG- -5'
28014 5' -52.5 NC_005887.1 + 34377 0.72 0.413845
Target:  5'- -cCGCGUAUCAGaGUgcGGCCGGgcGCg -3'
miRNA:   3'- caGCGCGUAGUC-CGuuUCGGCUaaCG- -5'
28014 5' -52.5 NC_005887.1 + 33976 0.66 0.760936
Target:  5'- cGUCGCGCucugcGUCAGGCuuucgcaggcuucGGCCGccagacgGCa -3'
miRNA:   3'- -CAGCGCG-----UAGUCCGuu-----------UCGGCuaa----CG- -5'
28014 5' -52.5 NC_005887.1 + 32739 1.13 0.000668
Target:  5'- gGUCGCGCAUCAGGCAAAGCCGAUUGCg -3'
miRNA:   3'- -CAGCGCGUAGUCCGUUUCGGCUAACG- -5'
28014 5' -52.5 NC_005887.1 + 31198 0.68 0.643893
Target:  5'- -gCGCGCGuagauuUCGGGC---GCCGcgUGCu -3'
miRNA:   3'- caGCGCGU------AGUCCGuuuCGGCuaACG- -5'
28014 5' -52.5 NC_005887.1 + 31012 0.66 0.788321
Target:  5'- cGUgGCGCGgcgCAGGCcacuauucgcAGGCCGcggcUUGCa -3'
miRNA:   3'- -CAgCGCGUa--GUCCGu---------UUCGGCu---AACG- -5'
28014 5' -52.5 NC_005887.1 + 29789 0.74 0.340036
Target:  5'- cGUCGCGCAgcUCGGGCcaguAGCUGGaagucUGCg -3'
miRNA:   3'- -CAGCGCGU--AGUCCGuu--UCGGCUa----ACG- -5'
28014 5' -52.5 NC_005887.1 + 29720 0.68 0.655424
Target:  5'- cGUCGCGUcgCAGGaucacgcGCCGcgcgUGCa -3'
miRNA:   3'- -CAGCGCGuaGUCCguuu---CGGCua--ACG- -5'
28014 5' -52.5 NC_005887.1 + 29406 0.66 0.760936
Target:  5'- gGUCGCG-AUCAGGCucgacagcucgucGGCCGAguagucgucgGCg -3'
miRNA:   3'- -CAGCGCgUAGUCCGuu-----------UCGGCUaa--------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.