Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28016 | 3' | -57.5 | NC_005887.1 | + | 1028 | 0.66 | 0.581168 |
Target: 5'- aCCGgCguCACGAcCGuGAUGCGGUguUCCu -3' miRNA: 3'- -GGCgGguGUGCU-GCcUUACGCCG--AGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 26740 | 0.67 | 0.486677 |
Target: 5'- gCCGCCUgcuGCGCGACGcccGUGCGcugcgucucaGCUUCg -3' miRNA: 3'- -GGCGGG---UGUGCUGCcu-UACGC----------CGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 40862 | 0.68 | 0.463659 |
Target: 5'- gCCGCgCCGCGCGAgcgccgcacgccguCGGcGUcgGGCUCCu -3' miRNA: 3'- -GGCG-GGUGUGCU--------------GCCuUAcgCCGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 32270 | 1.13 | 0.000279 |
Target: 5'- gCCGCCCACACGACGGAAUGCGGCUCCu -3' miRNA: 3'- -GGCGGGUGUGCUGCCUUACGCCGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 27074 | 0.66 | 0.563973 |
Target: 5'- cUCGUUCGC-CGGCGGAcgcucgccgcgcagcAcUGCGGCUgCCu -3' miRNA: 3'- -GGCGGGUGuGCUGCCU---------------U-ACGCCGA-GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 39394 | 0.66 | 0.559695 |
Target: 5'- gUCGCCgGCGagGAUGGuc-GCGGCggugCCg -3' miRNA: 3'- -GGCGGgUGUg-CUGCCuuaCGCCGa---GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 14835 | 0.66 | 0.549039 |
Target: 5'- aCCGCCCGcCGCGuauucacgccAUGGGAguaccaGgGGCUCa -3' miRNA: 3'- -GGCGGGU-GUGC----------UGCCUUa-----CgCCGAGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 39778 | 0.66 | 0.549039 |
Target: 5'- aCCGCUCGC-CGcucACGGccAUGCGGCg-- -3' miRNA: 3'- -GGCGGGUGuGC---UGCCu-UACGCCGagg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 8307 | 0.66 | 0.527927 |
Target: 5'- aCGCCgAUugGAC-GAGUGC-GCUCg -3' miRNA: 3'- gGCGGgUGugCUGcCUUACGcCGAGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 16028 | 0.67 | 0.496853 |
Target: 5'- gCGCCgGcCACGGCcugaaccugcaGGAcgGCGGCaacaUCCu -3' miRNA: 3'- gGCGGgU-GUGCUG-----------CCUuaCGCCG----AGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 27378 | 0.66 | 0.527927 |
Target: 5'- gCgGCCUGCGCGGCGuaggcgucGAGUuGCGGCgcgUCg -3' miRNA: 3'- -GgCGGGUGUGCUGC--------CUUA-CGCCGa--GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 36952 | 0.66 | 0.538448 |
Target: 5'- gCCGCCCGC-CGGuucacCGGucgcGCuGGCUUCg -3' miRNA: 3'- -GGCGGGUGuGCU-----GCCuua-CG-CCGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 12441 | 0.66 | 0.581168 |
Target: 5'- -gGCCCgcgGCAUGugGGAGUG-GGC-Cg -3' miRNA: 3'- ggCGGG---UGUGCugCCUUACgCCGaGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 30938 | 0.67 | 0.507124 |
Target: 5'- gCGCUCAgACGAUGccuugGCGGCgCCg -3' miRNA: 3'- gGCGGGUgUGCUGCcuua-CGCCGaGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 12967 | 0.66 | 0.570407 |
Target: 5'- aCCGCgCCGCAugggcCGAgGGcAUGCcGCUCg -3' miRNA: 3'- -GGCG-GGUGU-----GCUgCCuUACGcCGAGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 35897 | 0.66 | 0.549039 |
Target: 5'- gCGCCCggucuucggACA-GACGGAAUGCcGCguguugCCg -3' miRNA: 3'- gGCGGG---------UGUgCUGCCUUACGcCGa-----GG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 24458 | 0.67 | 0.507124 |
Target: 5'- gCCGCCgAacuucaucguCGCGGCGGAca--GGUUCCg -3' miRNA: 3'- -GGCGGgU----------GUGCUGCCUuacgCCGAGG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 38622 | 0.68 | 0.466629 |
Target: 5'- gCCGUCCAgcuugcgcggauCGCGGuCGGcgcGCGGCUCg -3' miRNA: 3'- -GGCGGGU------------GUGCU-GCCuuaCGCCGAGg -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 4669 | 0.66 | 0.570407 |
Target: 5'- gUCGCUUGCAUG-CGGg--GCGGCUgCu -3' miRNA: 3'- -GGCGGGUGUGCuGCCuuaCGCCGAgG- -5' |
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28016 | 3' | -57.5 | NC_005887.1 | + | 13860 | 0.66 | 0.553294 |
Target: 5'- cCCGCCgGCGCGcgucuacuucgucgaGCuGAA-GCGGC-CCg -3' miRNA: 3'- -GGCGGgUGUGC---------------UGcCUUaCGCCGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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