miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 5' -57.5 NC_005887.1 + 17621 0.66 0.517213
Target:  5'- -aUGGAaacgcUGCGCACGACGGUcaGCGcCGUg -3'
miRNA:   3'- gcACCU-----GCGCGUGUUGUCGa-CGC-GCA- -5'
28017 5' -57.5 NC_005887.1 + 17392 0.7 0.304993
Target:  5'- uCGcGGcCGCGCGCAagGCGGCccGCGCGc -3'
miRNA:   3'- -GCaCCuGCGCGUGU--UGUCGa-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 17174 0.68 0.406989
Target:  5'- gCGUGGGaGCGCGCGaacGCGGCcGCacGCGg -3'
miRNA:   3'- -GCACCUgCGCGUGU---UGUCGaCG--CGCa -5'
28017 5' -57.5 NC_005887.1 + 17043 0.66 0.47555
Target:  5'- --cGGAUGCGCAgCGGCAcGCUuGgGCGg -3'
miRNA:   3'- gcaCCUGCGCGU-GUUGU-CGA-CgCGCa -5'
28017 5' -57.5 NC_005887.1 + 15909 0.66 0.517213
Target:  5'- aGUcGGAucuCGCGCgGCuGCAGC-GCGCGUu -3'
miRNA:   3'- gCA-CCU---GCGCG-UGuUGUCGaCGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 15102 0.71 0.268671
Target:  5'- aCGcGGGCcgGCGCGCGauGCAGUUGCGCc- -3'
miRNA:   3'- -GCaCCUG--CGCGUGU--UGUCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 14850 0.74 0.170851
Target:  5'- uCGcGGGCGUGCACAccGCAGCaacaGCGCGc -3'
miRNA:   3'- -GCaCCUGCGCGUGU--UGUCGa---CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 14696 0.73 0.190538
Target:  5'- ----cGCGCGCGCGGCAGCUcaGCGCGc -3'
miRNA:   3'- gcaccUGCGCGUGUUGUCGA--CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 14631 0.78 0.086827
Target:  5'- --aGGGCGCGCucACGGCAGCcgGCGCGg -3'
miRNA:   3'- gcaCCUGCGCG--UGUUGUCGa-CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 14103 0.66 0.485815
Target:  5'- aGUGGugaaGCGCcgcucGCGA-AGCUGCGCGc -3'
miRNA:   3'- gCACCug--CGCG-----UGUUgUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 13943 0.67 0.435627
Target:  5'- ----uGCGCGCGCu-CGGCUGCGaCGUg -3'
miRNA:   3'- gcaccUGCGCGUGuuGUCGACGC-GCA- -5'
28017 5' -57.5 NC_005887.1 + 12716 0.67 0.445428
Target:  5'- aCGcUGGuCGCGCAgCAGCAGaaUGCGCu- -3'
miRNA:   3'- -GC-ACCuGCGCGU-GUUGUCg-ACGCGca -5'
28017 5' -57.5 NC_005887.1 + 12620 0.71 0.261164
Target:  5'- cCGUGcACGCGCggcgcgugauccuGCGACgcgacggcgaguGGCUGCGCGUg -3'
miRNA:   3'- -GCACcUGCGCG-------------UGUUG------------UCGACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 12465 0.67 0.425951
Target:  5'- aCGguucGACGCGCGCuucuCAGCUcGCGCu- -3'
miRNA:   3'- -GCac--CUGCGCGUGuu--GUCGA-CGCGca -5'
28017 5' -57.5 NC_005887.1 + 11190 0.66 0.517213
Target:  5'- aGUGG-CGCGaCACGAUGGUgcaggcguaUGCGCa- -3'
miRNA:   3'- gCACCuGCGC-GUGUUGUCG---------ACGCGca -5'
28017 5' -57.5 NC_005887.1 + 10353 0.71 0.248601
Target:  5'- aCGUGGACGCcgguaucacGUACAACGGCgUGC-CGa -3'
miRNA:   3'- -GCACCUGCG---------CGUGUUGUCG-ACGcGCa -5'
28017 5' -57.5 NC_005887.1 + 7849 0.7 0.300442
Target:  5'- -aUGGGCGUGCaguaccacgguccggGCGACAGCUucucggGCGCGa -3'
miRNA:   3'- gcACCUGCGCG---------------UGUUGUCGA------CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 6945 0.69 0.365447
Target:  5'- uCGUGGGCgaaggccgugcgcggGCGCaucgaGCAugAGCUGUGCa- -3'
miRNA:   3'- -GCACCUG---------------CGCG-----UGUugUCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 6043 0.72 0.223787
Target:  5'- cCG-GGugGUGCugGugGCAGCgGCGCGg -3'
miRNA:   3'- -GCaCCugCGCGugU--UGUCGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 5415 0.69 0.361976
Target:  5'- --cGGGCG-GCGCcGCAGCgaccgGCGCGa -3'
miRNA:   3'- gcaCCUGCgCGUGuUGUCGa----CGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.