Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28019 | 3' | -53.8 | NC_005887.1 | + | 35751 | 0.69 | 0.530752 |
Target: 5'- gGUGCcGCCAGCGuCGAUGAcGUuguccuuguucucgGCGCu -3' miRNA: 3'- -CGCGaCGGUCGUcGCUACUuCA--------------UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 14132 | 0.69 | 0.527459 |
Target: 5'- cGCGCUGCuCAaaaccgccgagacgcGCGGCGcUGAugcgGCGCa -3' miRNA: 3'- -CGCGACG-GU---------------CGUCGCuACUuca-UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 5919 | 0.69 | 0.52308 |
Target: 5'- aGgGCaagaaGCCGGCcGCGcgGAaggcGGUGCGCa -3' miRNA: 3'- -CgCGa----CGGUCGuCGCuaCU----UCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 32527 | 0.69 | 0.52308 |
Target: 5'- cGCGCUGaCCGGCuGCGAcgc-GUuCGCg -3' miRNA: 3'- -CGCGAC-GGUCGuCGCUacuuCAuGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 23393 | 0.69 | 0.52308 |
Target: 5'- cGCGCUGCCgcuGGCAGCc-UGcAGcaGCGCg -3' miRNA: 3'- -CGCGACGG---UCGUCGcuACuUCa-UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 28502 | 0.69 | 0.512195 |
Target: 5'- cGCGC-GCCGGCGGgaaGAUGAcg-AUGCg -3' miRNA: 3'- -CGCGaCGGUCGUCg--CUACUucaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 15836 | 0.7 | 0.480135 |
Target: 5'- aGCGCuUGCgCGGC-GCGAUcGAGGgaaACGCc -3' miRNA: 3'- -CGCG-ACG-GUCGuCGCUA-CUUCa--UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 35035 | 0.7 | 0.469665 |
Target: 5'- cGUGUUGUCGGCGGCGAcGGAcgGCGa -3' miRNA: 3'- -CGCGACGGUCGUCGCUaCUUcaUGCg -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 4675 | 0.7 | 0.459314 |
Target: 5'- cCGCUGCgCAGaCGGCGAgggucUGAuggGCGCg -3' miRNA: 3'- cGCGACG-GUC-GUCGCU-----ACUucaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 6428 | 0.7 | 0.459314 |
Target: 5'- cGUGUgGCCGGaCGGCcgcgccgaGAUcGAAGUGCGCg -3' miRNA: 3'- -CGCGaCGGUC-GUCG--------CUA-CUUCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 16698 | 0.7 | 0.459314 |
Target: 5'- cGCGCUG-CGGCuGGCGGUGAAGcucaaccUGCa -3' miRNA: 3'- -CGCGACgGUCG-UCGCUACUUCau-----GCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 37580 | 0.7 | 0.458285 |
Target: 5'- cGCGgaGCC-GCGGCGGaauucgGAucucgucAGUGCGCg -3' miRNA: 3'- -CGCgaCGGuCGUCGCUa-----CU-------UCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 29792 | 0.7 | 0.449085 |
Target: 5'- cGCGCagcucggGCCAGUAGCug-GAAGUcugcggguguGCGCg -3' miRNA: 3'- -CGCGa------CGGUCGUCGcuaCUUCA----------UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 12284 | 0.7 | 0.449085 |
Target: 5'- uGCGCcaGCuCGGCaaGGUGAUGGAGcugGCGCu -3' miRNA: 3'- -CGCGa-CG-GUCG--UCGCUACUUCa--UGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 38947 | 0.7 | 0.448069 |
Target: 5'- cGCcCUGCCAGCGguagcgcGCGgcGAAcagcGUGCGCa -3' miRNA: 3'- -CGcGACGGUCGU-------CGCuaCUU----CAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 29200 | 0.71 | 0.438983 |
Target: 5'- uGCGCgGCCuuaAGCugcGCGAUGGugaaguggauGGUAUGCa -3' miRNA: 3'- -CGCGaCGG---UCGu--CGCUACU----------UCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 40951 | 0.71 | 0.438983 |
Target: 5'- cCGCUGCCgAGCGGgcccaUGAUGAAcGaGCGCg -3' miRNA: 3'- cGCGACGG-UCGUC-----GCUACUU-CaUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 15969 | 0.71 | 0.438983 |
Target: 5'- cCGCUGUC-GCAGUucgucgagGAUGucGUGCGCg -3' miRNA: 3'- cGCGACGGuCGUCG--------CUACuuCAUGCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 12347 | 0.71 | 0.429013 |
Target: 5'- uCGCUcGCCGGCcaGGCGGUGAcGUG-GCa -3' miRNA: 3'- cGCGA-CGGUCG--UCGCUACUuCAUgCG- -5' |
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28019 | 3' | -53.8 | NC_005887.1 | + | 40776 | 0.71 | 0.419177 |
Target: 5'- cGCGCcGCCgAGcCGGCGGUcGAGGUucguggcggcgACGCg -3' miRNA: 3'- -CGCGaCGG-UC-GUCGCUA-CUUCA-----------UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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