miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 17275 0.72 0.247298
Target:  5'- gGGCGAGAcgUCGGGcggcGCCGCGCgCGcaAACg -3'
miRNA:   3'- gCCGUUCU--AGCCUa---CGGCGCG-GC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 17333 0.66 0.536672
Target:  5'- cCGGCu-GGcCGGcgGCCGCcgGCgCGAGCu -3'
miRNA:   3'- -GCCGuuCUaGCCuaCGGCG--CG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 17478 0.67 0.473689
Target:  5'- gCGGCA---UCGGccGCCGC-CUGGACg -3'
miRNA:   3'- -GCCGUucuAGCCuaCGGCGcGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18137 0.66 0.52595
Target:  5'- cCGGCgAAGcgCGGGccgccgacGUCGUGCCGAAg -3'
miRNA:   3'- -GCCG-UUCuaGCCUa-------CGGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 18539 0.66 0.536672
Target:  5'- gGGCGuucucGGUgGGcgGCgGCGCCGGc- -3'
miRNA:   3'- gCCGUu----CUAgCCuaCGgCGCGGCUug -5'
28023 5' -56.8 NC_005887.1 + 18623 0.68 0.433825
Target:  5'- uCGGCAGcgcGAUCGGcgGCC-CGCUGcugucGACg -3'
miRNA:   3'- -GCCGUU---CUAGCCuaCGGcGCGGC-----UUG- -5'
28023 5' -56.8 NC_005887.1 + 18867 0.66 0.52595
Target:  5'- uCGGCAagcAGAUCaaGGgcGUCGCcggcuGCCGGGCu -3'
miRNA:   3'- -GCCGU---UCUAG--CCuaCGGCG-----CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18915 0.73 0.216735
Target:  5'- gCGGCGGGAUggCGGGcgGCUGCGaCGAGCu -3'
miRNA:   3'- -GCCGUUCUA--GCCUa-CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 23441 0.71 0.274249
Target:  5'- uCGGUGAGcgcugCGGGcUGCCgGUGCCGGGCg -3'
miRNA:   3'- -GCCGUUCua---GCCU-ACGG-CGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 24205 0.67 0.515309
Target:  5'- uCGGCAcGAcgUCGGcgGCCcGCGCUucGCc -3'
miRNA:   3'- -GCCGUuCU--AGCCuaCGG-CGCGGcuUG- -5'
28023 5' -56.8 NC_005887.1 + 24602 0.67 0.463546
Target:  5'- gGGCGccAUCagccgcGcgGCCGUGCCGAGCg -3'
miRNA:   3'- gCCGUucUAGc-----CuaCGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 25361 0.67 0.473689
Target:  5'- uGGC-GGAUCGGcacguaGCCGUaGUCGAGCu -3'
miRNA:   3'- gCCGuUCUAGCCua----CGGCG-CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 25515 0.69 0.377871
Target:  5'- gCGGCGGGuggCGGcauaaucGUCGcCGCCGAGCg -3'
miRNA:   3'- -GCCGUUCua-GCCua-----CGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 27032 0.66 0.536672
Target:  5'- uCGGCGAGcgCGcGAccgcgcacgcUGCCGC-CCGAc- -3'
miRNA:   3'- -GCCGUUCuaGC-CU----------ACGGCGcGGCUug -5'
28023 5' -56.8 NC_005887.1 + 27726 0.7 0.346708
Target:  5'- aCGGCGgucaggccguaguagAGA-CGGAagugGCCGaUGCCGAGCg -3'
miRNA:   3'- -GCCGU---------------UCUaGCCUa---CGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 27956 0.67 0.515309
Target:  5'- uCGGacAGGUCGuacgcGCgCGCGCCGAGCg -3'
miRNA:   3'- -GCCguUCUAGCcua--CG-GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 28112 1.1 0.000418
Target:  5'- gCGGCAAGAUCGGAUGCCGCGCCGAACa -3'
miRNA:   3'- -GCCGUUCUAGCCUACGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 28904 0.68 0.433825
Target:  5'- aCGGCuacGaAUUGGAUGCgCGCGCCcauuGCg -3'
miRNA:   3'- -GCCGuu-C-UAGCCUACG-GCGCGGcu--UG- -5'
28023 5' -56.8 NC_005887.1 + 29022 0.77 0.117818
Target:  5'- gCGGCGAGAUcCGcGAUGCgGCcggcguuGCCGAACg -3'
miRNA:   3'- -GCCGUUCUA-GC-CUACGgCG-------CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 29762 0.71 0.281344
Target:  5'- cCGGCGAgcuGAUCgcgaGGAUcGCCGCGUCGcGCa -3'
miRNA:   3'- -GCCGUU---CUAG----CCUA-CGGCGCGGCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.