Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28023 | 5' | -56.8 | NC_005887.1 | + | 12868 | 0.69 | 0.386855 |
Target: 5'- aGGCAcGAccgUGGcagGUGCCGUGCgCGAGCu -3' miRNA: 3'- gCCGUuCUa--GCC---UACGGCGCG-GCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 25515 | 0.69 | 0.377871 |
Target: 5'- gCGGCGGGuggCGGcauaaucGUCGcCGCCGAGCg -3' miRNA: 3'- -GCCGUUCua-GCCua-----CGGC-GCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 10194 | 0.69 | 0.369027 |
Target: 5'- aCGGUuucgucGAGugcGUCGcgucGAUGcCCGCGCCGGACg -3' miRNA: 3'- -GCCG------UUC---UAGC----CUAC-GGCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 18867 | 0.66 | 0.52595 |
Target: 5'- uCGGCAagcAGAUCaaGGgcGUCGCcggcuGCCGGGCu -3' miRNA: 3'- -GCCGU---UCUAG--CCuaCGGCG-----CGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 29769 | 0.66 | 0.522749 |
Target: 5'- gCGGCcGGGUCGGcggacaccaugcgcAUGCCGgCgGCCGucGACg -3' miRNA: 3'- -GCCGuUCUAGCC--------------UACGGC-G-CGGC--UUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 27956 | 0.67 | 0.515309 |
Target: 5'- uCGGacAGGUCGuacgcGCgCGCGCCGAGCg -3' miRNA: 3'- -GCCguUCUAGCcua--CG-GCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 802 | 0.67 | 0.515309 |
Target: 5'- uGGCu-GAcuUCGcGUG-CGCGCCGAGCg -3' miRNA: 3'- gCCGuuCU--AGCcUACgGCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 24205 | 0.67 | 0.515309 |
Target: 5'- uCGGCAcGAcgUCGGcgGCCcGCGCUucGCc -3' miRNA: 3'- -GCCGUuCU--AGCCuaCGG-CGCGGcuUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 8378 | 0.67 | 0.51425 |
Target: 5'- aCGGCGccGGugcugaCGGAcGCCGCacgcgacgugcucGCCGAGCg -3' miRNA: 3'- -GCCGU--UCua----GCCUaCGGCG-------------CGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 39842 | 0.67 | 0.504757 |
Target: 5'- gCGGCAGuc-CGGGUGCacgaGCagGCCGGGCu -3' miRNA: 3'- -GCCGUUcuaGCCUACGg---CG--CGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 957 | 0.66 | 0.52595 |
Target: 5'- uCGGCAucGUCGGAgaacacGUCGCGCacggucugcuCGAACg -3' miRNA: 3'- -GCCGUucUAGCCUa-----CGGCGCG----------GCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 625 | 0.66 | 0.536672 |
Target: 5'- gCGcCGGGAUCGGAUcGCCGC-CCGu-- -3' miRNA: 3'- -GCcGUUCUAGCCUA-CGGCGcGGCuug -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 35735 | 0.66 | 0.536672 |
Target: 5'- aGGCGuuGUCGGAUccggugccGCCaGCGUCGAugACg -3' miRNA: 3'- gCCGUucUAGCCUA--------CGG-CGCGGCU--UG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 17333 | 0.66 | 0.536672 |
Target: 5'- cCGGCu-GGcCGGcgGCCGCcgGCgCGAGCu -3' miRNA: 3'- -GCCGuuCUaGCCuaCGGCG--CG-GCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 1147 | 0.66 | 0.547469 |
Target: 5'- gGGCAcgacgacgcgcGGGUCGGAUGCa--GCCaGGCg -3' miRNA: 3'- gCCGU-----------UCUAGCCUACGgcgCGGcUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 5920 | 0.66 | 0.558333 |
Target: 5'- gGGCAAGAagccg-GCCGCGCgGAAg -3' miRNA: 3'- gCCGUUCUagccuaCGGCGCGgCUUg -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 35827 | 0.66 | 0.558333 |
Target: 5'- uCGGCGGGggC-GAUGCCGUcauuGCCguaGAACa -3' miRNA: 3'- -GCCGUUCuaGcCUACGGCG----CGG---CUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 30329 | 0.66 | 0.558333 |
Target: 5'- aCGGUugcGAgCGGcGUGCgUGCGCCGGAUg -3' miRNA: 3'- -GCCGuu-CUaGCC-UACG-GCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 40835 | 0.66 | 0.565975 |
Target: 5'- -aGCAGGucCGGGUacguguuccgcacgGCCGCGCCGcGCg -3' miRNA: 3'- gcCGUUCuaGCCUA--------------CGGCGCGGCuUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 28112 | 1.1 | 0.000418 |
Target: 5'- gCGGCAAGAUCGGAUGCCGCGCCGAACa -3' miRNA: 3'- -GCCGUUCUAGCCUACGGCGCGGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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