Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28023 | 5' | -56.8 | NC_005887.1 | + | 14687 | 0.67 | 0.515309 |
Target: 5'- -cGCAcGAUCGGGcucGUCGCGgCGGGCg -3' miRNA: 3'- gcCGUuCUAGCCUa--CGGCGCgGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 14993 | 0.66 | 0.580235 |
Target: 5'- cCGcGCAGGccgcaGGcGUGCCGC-CCGAGCu -3' miRNA: 3'- -GC-CGUUCuag--CC-UACGGCGcGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 5845 | 0.66 | 0.580235 |
Target: 5'- gGGCGAag-CGGAgcucaCCGCGCUGAAa -3' miRNA: 3'- gCCGUUcuaGCCUac---GGCGCGGCUUg -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 33953 | 0.66 | 0.569258 |
Target: 5'- uCGGCGAGcacGUCGcGUGCgGCGuCCGucAGCa -3' miRNA: 3'- -GCCGUUC---UAGCcUACGgCGC-GGC--UUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 2706 | 0.66 | 0.569258 |
Target: 5'- gCGGCAAG--CGGccgaGCCGCGCgacgaCGGACu -3' miRNA: 3'- -GCCGUUCuaGCCua--CGGCGCG-----GCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 14345 | 0.66 | 0.547469 |
Target: 5'- gCGGC--GAUCGuGAaGCagCGUGCCGGGCa -3' miRNA: 3'- -GCCGuuCUAGC-CUaCG--GCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 2228 | 0.66 | 0.547469 |
Target: 5'- uGGCGcauccGGUCGGAagucGUCGCGaCGAGCa -3' miRNA: 3'- gCCGUu----CUAGCCUa---CGGCGCgGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 18539 | 0.66 | 0.536672 |
Target: 5'- gGGCGuucucGGUgGGcgGCgGCGCCGGc- -3' miRNA: 3'- gCCGUu----CUAgCCuaCGgCGCGGCUug -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 27032 | 0.66 | 0.536672 |
Target: 5'- uCGGCGAGcgCGcGAccgcgcacgcUGCCGC-CCGAc- -3' miRNA: 3'- -GCCGUUCuaGC-CU----------ACGGCGcGGCUug -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 18137 | 0.66 | 0.52595 |
Target: 5'- cCGGCgAAGcgCGGGccgccgacGUCGUGCCGAAg -3' miRNA: 3'- -GCCG-UUCuaGCCUa-------CGGCGCGGCUUg -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 3173 | 0.72 | 0.247298 |
Target: 5'- uCGaCAAGuUCGGGcagcUGCCGCGcCCGGACa -3' miRNA: 3'- -GCcGUUCuAGCCU----ACGGCGC-GGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 1831 | 0.67 | 0.513192 |
Target: 5'- aCGGCAucuUCGGcgacacgaaCGCGCCGGACu -3' miRNA: 3'- -GCCGUucuAGCCuacg-----GCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 14204 | 0.67 | 0.504757 |
Target: 5'- gGGCGcGGccUCGGAcaggGCgGCGCCGcGCu -3' miRNA: 3'- gCCGUuCU--AGCCUa---CGgCGCGGCuUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 7447 | 0.67 | 0.504757 |
Target: 5'- uGGCGugcgcgucguGAUCGGcAUGCCGUuCgCGAACg -3' miRNA: 3'- gCCGUu---------CUAGCC-UACGGCGcG-GCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 30274 | 0.67 | 0.494299 |
Target: 5'- cCGGCGcgacGAUCG--UGCCGCGCaCGAc- -3' miRNA: 3'- -GCCGUu---CUAGCcuACGGCGCG-GCUug -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 32788 | 0.67 | 0.493259 |
Target: 5'- uGcGCAGGAUCGGcgcgcGCCGCuucacggGCaCGAACa -3' miRNA: 3'- gC-CGUUCUAGCCua---CGGCG-------CG-GCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 15651 | 0.67 | 0.483941 |
Target: 5'- gGGCGccguGUCGcaGAUG-CGCGCCGAGCu -3' miRNA: 3'- gCCGUuc--UAGC--CUACgGCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 16889 | 0.67 | 0.463546 |
Target: 5'- aGGCAacgAGGUUGcaaagGCUGCaGCCGAGCa -3' miRNA: 3'- gCCGU---UCUAGCcua--CGGCG-CGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 5048 | 0.67 | 0.463546 |
Target: 5'- aGGCA----CGGcaaugGCCGCGCCGGAa -3' miRNA: 3'- gCCGUucuaGCCua---CGGCGCGGCUUg -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 17157 | 0.68 | 0.453519 |
Target: 5'- uCGGCgAAGAUCGcGAgGCgugggaGCGCgCGAACg -3' miRNA: 3'- -GCCG-UUCUAGC-CUaCGg-----CGCG-GCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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