miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 14687 0.67 0.515309
Target:  5'- -cGCAcGAUCGGGcucGUCGCGgCGGGCg -3'
miRNA:   3'- gcCGUuCUAGCCUa--CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14993 0.66 0.580235
Target:  5'- cCGcGCAGGccgcaGGcGUGCCGC-CCGAGCu -3'
miRNA:   3'- -GC-CGUUCuag--CC-UACGGCGcGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 5845 0.66 0.580235
Target:  5'- gGGCGAag-CGGAgcucaCCGCGCUGAAa -3'
miRNA:   3'- gCCGUUcuaGCCUac---GGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 33953 0.66 0.569258
Target:  5'- uCGGCGAGcacGUCGcGUGCgGCGuCCGucAGCa -3'
miRNA:   3'- -GCCGUUC---UAGCcUACGgCGC-GGC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 2706 0.66 0.569258
Target:  5'- gCGGCAAG--CGGccgaGCCGCGCgacgaCGGACu -3'
miRNA:   3'- -GCCGUUCuaGCCua--CGGCGCG-----GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14345 0.66 0.547469
Target:  5'- gCGGC--GAUCGuGAaGCagCGUGCCGGGCa -3'
miRNA:   3'- -GCCGuuCUAGC-CUaCG--GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 2228 0.66 0.547469
Target:  5'- uGGCGcauccGGUCGGAagucGUCGCGaCGAGCa -3'
miRNA:   3'- gCCGUu----CUAGCCUa---CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18539 0.66 0.536672
Target:  5'- gGGCGuucucGGUgGGcgGCgGCGCCGGc- -3'
miRNA:   3'- gCCGUu----CUAgCCuaCGgCGCGGCUug -5'
28023 5' -56.8 NC_005887.1 + 27032 0.66 0.536672
Target:  5'- uCGGCGAGcgCGcGAccgcgcacgcUGCCGC-CCGAc- -3'
miRNA:   3'- -GCCGUUCuaGC-CU----------ACGGCGcGGCUug -5'
28023 5' -56.8 NC_005887.1 + 18137 0.66 0.52595
Target:  5'- cCGGCgAAGcgCGGGccgccgacGUCGUGCCGAAg -3'
miRNA:   3'- -GCCG-UUCuaGCCUa-------CGGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 3173 0.72 0.247298
Target:  5'- uCGaCAAGuUCGGGcagcUGCCGCGcCCGGACa -3'
miRNA:   3'- -GCcGUUCuAGCCU----ACGGCGC-GGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1831 0.67 0.513192
Target:  5'- aCGGCAucuUCGGcgacacgaaCGCGCCGGACu -3'
miRNA:   3'- -GCCGUucuAGCCuacg-----GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14204 0.67 0.504757
Target:  5'- gGGCGcGGccUCGGAcaggGCgGCGCCGcGCu -3'
miRNA:   3'- gCCGUuCU--AGCCUa---CGgCGCGGCuUG- -5'
28023 5' -56.8 NC_005887.1 + 7447 0.67 0.504757
Target:  5'- uGGCGugcgcgucguGAUCGGcAUGCCGUuCgCGAACg -3'
miRNA:   3'- gCCGUu---------CUAGCC-UACGGCGcG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 30274 0.67 0.494299
Target:  5'- cCGGCGcgacGAUCG--UGCCGCGCaCGAc- -3'
miRNA:   3'- -GCCGUu---CUAGCcuACGGCGCG-GCUug -5'
28023 5' -56.8 NC_005887.1 + 32788 0.67 0.493259
Target:  5'- uGcGCAGGAUCGGcgcgcGCCGCuucacggGCaCGAACa -3'
miRNA:   3'- gC-CGUUCUAGCCua---CGGCG-------CG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 15651 0.67 0.483941
Target:  5'- gGGCGccguGUCGcaGAUG-CGCGCCGAGCu -3'
miRNA:   3'- gCCGUuc--UAGC--CUACgGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 16889 0.67 0.463546
Target:  5'- aGGCAacgAGGUUGcaaagGCUGCaGCCGAGCa -3'
miRNA:   3'- gCCGU---UCUAGCcua--CGGCG-CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 5048 0.67 0.463546
Target:  5'- aGGCA----CGGcaaugGCCGCGCCGGAa -3'
miRNA:   3'- gCCGUucuaGCCua---CGGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 17157 0.68 0.453519
Target:  5'- uCGGCgAAGAUCGcGAgGCgugggaGCGCgCGAACg -3'
miRNA:   3'- -GCCG-UUCUAGC-CUaCGg-----CGCG-GCUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.