miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 35126 0.68 0.433825
Target:  5'- gGGCGcGGAUCGGAauCCGgCGCCacGGACg -3'
miRNA:   3'- gCCGU-UCUAGCCUacGGC-GCGG--CUUG- -5'
28023 5' -56.8 NC_005887.1 + 25515 0.69 0.377871
Target:  5'- gCGGCGGGuggCGGcauaaucGUCGcCGCCGAGCg -3'
miRNA:   3'- -GCCGUUCua-GCCua-----CGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 12868 0.69 0.386855
Target:  5'- aGGCAcGAccgUGGcagGUGCCGUGCgCGAGCu -3'
miRNA:   3'- gCCGUuCUa--GCC---UACGGCGCG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 40282 0.69 0.386855
Target:  5'- cCGGCAAG-UCGG-UGCCGC-UCGAu- -3'
miRNA:   3'- -GCCGUUCuAGCCuACGGCGcGGCUug -5'
28023 5' -56.8 NC_005887.1 + 42090 0.69 0.40524
Target:  5'- uCGcGUggGG-CGcGAUGCCGCGUCGAcgaACg -3'
miRNA:   3'- -GC-CGuuCUaGC-CUACGGCGCGGCU---UG- -5'
28023 5' -56.8 NC_005887.1 + 17032 0.68 0.424166
Target:  5'- uGGCAacGGAUCGGAUGCgcagcggcaCGCuugGgCGGACg -3'
miRNA:   3'- gCCGU--UCUAGCCUACG---------GCG---CgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18623 0.68 0.433825
Target:  5'- uCGGCAGcgcGAUCGGcgGCC-CGCUGcugucGACg -3'
miRNA:   3'- -GCCGUU---CUAGCCuaCGGcGCGGC-----UUG- -5'
28023 5' -56.8 NC_005887.1 + 13724 0.68 0.433825
Target:  5'- aCGGCAAGccgaacaucGUCGcGAUGCCGUacgGCUGGcGCg -3'
miRNA:   3'- -GCCGUUC---------UAGC-CUACGGCG---CGGCU-UG- -5'
28023 5' -56.8 NC_005887.1 + 28904 0.68 0.433825
Target:  5'- aCGGCuacGaAUUGGAUGCgCGCGCCcauuGCg -3'
miRNA:   3'- -GCCGuu-C-UAGCCUACG-GCGCGGcu--UG- -5'
28023 5' -56.8 NC_005887.1 + 10194 0.69 0.369027
Target:  5'- aCGGUuucgucGAGugcGUCGcgucGAUGcCCGCGCCGGACg -3'
miRNA:   3'- -GCCG------UUC---UAGC----CUAC-GGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 27726 0.7 0.346708
Target:  5'- aCGGCGgucaggccguaguagAGA-CGGAagugGCCGaUGCCGAGCg -3'
miRNA:   3'- -GCCGU---------------UCUaGCCUa---CGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 4686 0.7 0.343361
Target:  5'- aCGGCgAGGGUCuGAUgGgCGCGCCGAu- -3'
miRNA:   3'- -GCCG-UUCUAGcCUA-CgGCGCGGCUug -5'
28023 5' -56.8 NC_005887.1 + 3173 0.72 0.247298
Target:  5'- uCGaCAAGuUCGGGcagcUGCCGCGcCCGGACa -3'
miRNA:   3'- -GCcGUUCuAGCCU----ACGGCGC-GGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 17275 0.72 0.247298
Target:  5'- gGGCGAGAcgUCGGGcggcGCCGCGCgCGcaAACg -3'
miRNA:   3'- gCCGUUCU--AGCCUa---CGGCGCG-GC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 13624 0.72 0.267298
Target:  5'- gCGGCGcg--CGGcgGCCGCacucaGCCGAGCa -3'
miRNA:   3'- -GCCGUucuaGCCuaCGGCG-----CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 29762 0.71 0.281344
Target:  5'- cCGGCGAgcuGAUCgcgaGGAUcGCCGCGUCGcGCa -3'
miRNA:   3'- -GCCGUU---CUAG----CCUA-CGGCGCGGCuUG- -5'
28023 5' -56.8 NC_005887.1 + 33391 0.71 0.303502
Target:  5'- gCGGCAGGAugaggcucaUCGcGGUGCguagauacCGCGaCCGAGCa -3'
miRNA:   3'- -GCCGUUCU---------AGC-CUACG--------GCGC-GGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 4794 0.7 0.334278
Target:  5'- cCGGCGAGGccgugcucgCGGAucucgcgcaguucUGCCGCGCC-AACc -3'
miRNA:   3'- -GCCGUUCUa--------GCCU-------------ACGGCGCGGcUUG- -5'
28023 5' -56.8 NC_005887.1 + 16491 0.7 0.335096
Target:  5'- cCGGCGGGcugGUCGGcgAUGUCGCagGCCGAucGCg -3'
miRNA:   3'- -GCCGUUC---UAGCC--UACGGCG--CGGCU--UG- -5'
28023 5' -56.8 NC_005887.1 + 16246 0.7 0.335096
Target:  5'- cCGGCGAGcgcaCGGGcaCCGuCGCCGAGCu -3'
miRNA:   3'- -GCCGUUCua--GCCUacGGC-GCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.