miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 37730 0.66 0.580235
Target:  5'- cCGGCGGccacCGGc-GCCGCGgCGAGCa -3'
miRNA:   3'- -GCCGUUcua-GCCuaCGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 25361 0.67 0.473689
Target:  5'- uGGC-GGAUCGGcacguaGCCGUaGUCGAGCu -3'
miRNA:   3'- gCCGuUCUAGCCua----CGGCG-CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 24602 0.67 0.463546
Target:  5'- gGGCGccAUCagccgcGcgGCCGUGCCGAGCg -3'
miRNA:   3'- gCCGUucUAGc-----CuaCGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 28112 1.1 0.000418
Target:  5'- gCGGCAAGAUCGGAUGCCGCGCCGAACa -3'
miRNA:   3'- -GCCGUUCUAGCCUACGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 5920 0.66 0.558333
Target:  5'- gGGCAAGAagccg-GCCGCGCgGAAg -3'
miRNA:   3'- gCCGUUCUagccuaCGGCGCGgCUUg -5'
28023 5' -56.8 NC_005887.1 + 1147 0.66 0.547469
Target:  5'- gGGCAcgacgacgcgcGGGUCGGAUGCa--GCCaGGCg -3'
miRNA:   3'- gCCGU-----------UCUAGCCUACGgcgCGGcUUG- -5'
28023 5' -56.8 NC_005887.1 + 35735 0.66 0.536672
Target:  5'- aGGCGuuGUCGGAUccggugccGCCaGCGUCGAugACg -3'
miRNA:   3'- gCCGUucUAGCCUA--------CGG-CGCGGCU--UG- -5'
28023 5' -56.8 NC_005887.1 + 625 0.66 0.536672
Target:  5'- gCGcCGGGAUCGGAUcGCCGC-CCGu-- -3'
miRNA:   3'- -GCcGUUCUAGCCUA-CGGCGcGGCuug -5'
28023 5' -56.8 NC_005887.1 + 29769 0.66 0.522749
Target:  5'- gCGGCcGGGUCGGcggacaccaugcgcAUGCCGgCgGCCGucGACg -3'
miRNA:   3'- -GCCGuUCUAGCC--------------UACGGC-G-CGGC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 39842 0.67 0.504757
Target:  5'- gCGGCAGuc-CGGGUGCacgaGCagGCCGGGCu -3'
miRNA:   3'- -GCCGUUcuaGCCUACGg---CG--CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 802 0.67 0.515309
Target:  5'- uGGCu-GAcuUCGcGUG-CGCGCCGAGCg -3'
miRNA:   3'- gCCGuuCU--AGCcUACgGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18867 0.66 0.52595
Target:  5'- uCGGCAagcAGAUCaaGGgcGUCGCcggcuGCCGGGCu -3'
miRNA:   3'- -GCCGU---UCUAG--CCuaCGGCG-----CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 40835 0.66 0.565975
Target:  5'- -aGCAGGucCGGGUacguguuccgcacgGCCGCGCCGcGCg -3'
miRNA:   3'- gcCGUUCuaGCCUA--------------CGGCGCGGCuUG- -5'
28023 5' -56.8 NC_005887.1 + 24205 0.67 0.515309
Target:  5'- uCGGCAcGAcgUCGGcgGCCcGCGCUucGCc -3'
miRNA:   3'- -GCCGUuCU--AGCCuaCGG-CGCGGcuUG- -5'
28023 5' -56.8 NC_005887.1 + 30329 0.66 0.558333
Target:  5'- aCGGUugcGAgCGGcGUGCgUGCGCCGGAUg -3'
miRNA:   3'- -GCCGuu-CUaGCC-UACG-GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 957 0.66 0.52595
Target:  5'- uCGGCAucGUCGGAgaacacGUCGCGCacggucugcuCGAACg -3'
miRNA:   3'- -GCCGUucUAGCCUa-----CGGCGCG----------GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 8378 0.67 0.51425
Target:  5'- aCGGCGccGGugcugaCGGAcGCCGCacgcgacgugcucGCCGAGCg -3'
miRNA:   3'- -GCCGU--UCua----GCCUaCGGCG-------------CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 17478 0.67 0.473689
Target:  5'- gCGGCA---UCGGccGCCGC-CUGGACg -3'
miRNA:   3'- -GCCGUucuAGCCuaCGGCGcGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 35827 0.66 0.558333
Target:  5'- uCGGCGGGggC-GAUGCCGUcauuGCCguaGAACa -3'
miRNA:   3'- -GCCGUUCuaGcCUACGGCG----CGG---CUUG- -5'
28023 5' -56.8 NC_005887.1 + 17333 0.66 0.536672
Target:  5'- cCGGCu-GGcCGGcgGCCGCcgGCgCGAGCu -3'
miRNA:   3'- -GCCGuuCUaGCCuaCGGCG--CG-GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.