miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 24205 0.67 0.515309
Target:  5'- uCGGCAcGAcgUCGGcgGCCcGCGCUucGCc -3'
miRNA:   3'- -GCCGUuCU--AGCCuaCGG-CGCGGcuUG- -5'
28023 5' -56.8 NC_005887.1 + 35827 0.66 0.558333
Target:  5'- uCGGCGGGggC-GAUGCCGUcauuGCCguaGAACa -3'
miRNA:   3'- -GCCGUUCuaGcCUACGGCG----CGG---CUUG- -5'
28023 5' -56.8 NC_005887.1 + 36906 0.73 0.228554
Target:  5'- gCGGCAGGAgugccagCGGGcgcgugGUCGCGCCGGucGCu -3'
miRNA:   3'- -GCCGUUCUa------GCCUa-----CGGCGCGGCU--UG- -5'
28023 5' -56.8 NC_005887.1 + 1950 0.69 0.386855
Target:  5'- cCGGCAc-GUCG---GCCGUGCCGGGCa -3'
miRNA:   3'- -GCCGUucUAGCcuaCGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 25361 0.67 0.473689
Target:  5'- uGGC-GGAUCGGcacguaGCCGUaGUCGAGCu -3'
miRNA:   3'- gCCGuUCUAGCCua----CGGCG-CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 30329 0.66 0.558333
Target:  5'- aCGGUugcGAgCGGcGUGCgUGCGCCGGAUg -3'
miRNA:   3'- -GCCGuu-CUaGCC-UACG-GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 39398 0.69 0.395978
Target:  5'- cCGGCGAGGauggucgCGGcgGUGCCGCGgCGcuuGCg -3'
miRNA:   3'- -GCCGUUCUa------GCC--UACGGCGCgGCu--UG- -5'
28023 5' -56.8 NC_005887.1 + 40835 0.66 0.565975
Target:  5'- -aGCAGGucCGGGUacguguuccgcacgGCCGCGCCGcGCg -3'
miRNA:   3'- gcCGUUCuaGCCUA--------------CGGCGCGGCuUG- -5'
28023 5' -56.8 NC_005887.1 + 37730 0.66 0.580235
Target:  5'- cCGGCGGccacCGGc-GCCGCGgCGAGCa -3'
miRNA:   3'- -GCCGUUcua-GCCuaCGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18867 0.66 0.52595
Target:  5'- uCGGCAagcAGAUCaaGGgcGUCGCcggcuGCCGGGCu -3'
miRNA:   3'- -GCCGU---UCUAG--CCuaCGGCG-----CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 17478 0.67 0.473689
Target:  5'- gCGGCA---UCGGccGCCGC-CUGGACg -3'
miRNA:   3'- -GCCGUucuAGCCuaCGGCGcGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 28112 1.1 0.000418
Target:  5'- gCGGCAAGAUCGGAUGCCGCGCCGAACa -3'
miRNA:   3'- -GCCGUUCUAGCCUACGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1083 0.68 0.424166
Target:  5'- uGcGCAGGucgaCGGcgccauUGCCGaCGCCGAGCa -3'
miRNA:   3'- gC-CGUUCua--GCCu-----ACGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 6081 0.69 0.37787
Target:  5'- uCGaGCGAGuacgCGGAcgaaggcacgGCCGCGCaCGAGCu -3'
miRNA:   3'- -GC-CGUUCua--GCCUa---------CGGCGCG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 12080 0.71 0.288584
Target:  5'- gCGGCAcGAUC----GUCGCGCCGGACg -3'
miRNA:   3'- -GCCGUuCUAGccuaCGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18915 0.73 0.216735
Target:  5'- gCGGCGGGAUggCGGGcgGCUGCGaCGAGCu -3'
miRNA:   3'- -GCCGUUCUA--GCCUa-CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 29769 0.66 0.522749
Target:  5'- gCGGCcGGGUCGGcggacaccaugcgcAUGCCGgCgGCCGucGACg -3'
miRNA:   3'- -GCCGuUCUAGCC--------------UACGGC-G-CGGC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 5920 0.66 0.558333
Target:  5'- gGGCAAGAagccg-GCCGCGCgGAAg -3'
miRNA:   3'- gCCGUUCUagccuaCGGCGCGgCUUg -5'
28023 5' -56.8 NC_005887.1 + 35735 0.66 0.536672
Target:  5'- aGGCGuuGUCGGAUccggugccGCCaGCGUCGAugACg -3'
miRNA:   3'- gCCGUucUAGCCUA--------CGG-CGCGGCU--UG- -5'
28023 5' -56.8 NC_005887.1 + 30274 0.67 0.494299
Target:  5'- cCGGCGcgacGAUCG--UGCCGCGCaCGAc- -3'
miRNA:   3'- -GCCGUu---CUAGCcuACGGCGCG-GCUug -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.