Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28023 | 5' | -56.8 | NC_005887.1 | + | 24205 | 0.67 | 0.515309 |
Target: 5'- uCGGCAcGAcgUCGGcgGCCcGCGCUucGCc -3' miRNA: 3'- -GCCGUuCU--AGCCuaCGG-CGCGGcuUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 35827 | 0.66 | 0.558333 |
Target: 5'- uCGGCGGGggC-GAUGCCGUcauuGCCguaGAACa -3' miRNA: 3'- -GCCGUUCuaGcCUACGGCG----CGG---CUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 36906 | 0.73 | 0.228554 |
Target: 5'- gCGGCAGGAgugccagCGGGcgcgugGUCGCGCCGGucGCu -3' miRNA: 3'- -GCCGUUCUa------GCCUa-----CGGCGCGGCU--UG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 1950 | 0.69 | 0.386855 |
Target: 5'- cCGGCAc-GUCG---GCCGUGCCGGGCa -3' miRNA: 3'- -GCCGUucUAGCcuaCGGCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 25361 | 0.67 | 0.473689 |
Target: 5'- uGGC-GGAUCGGcacguaGCCGUaGUCGAGCu -3' miRNA: 3'- gCCGuUCUAGCCua----CGGCG-CGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 30329 | 0.66 | 0.558333 |
Target: 5'- aCGGUugcGAgCGGcGUGCgUGCGCCGGAUg -3' miRNA: 3'- -GCCGuu-CUaGCC-UACG-GCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 39398 | 0.69 | 0.395978 |
Target: 5'- cCGGCGAGGauggucgCGGcgGUGCCGCGgCGcuuGCg -3' miRNA: 3'- -GCCGUUCUa------GCC--UACGGCGCgGCu--UG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 40835 | 0.66 | 0.565975 |
Target: 5'- -aGCAGGucCGGGUacguguuccgcacgGCCGCGCCGcGCg -3' miRNA: 3'- gcCGUUCuaGCCUA--------------CGGCGCGGCuUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 37730 | 0.66 | 0.580235 |
Target: 5'- cCGGCGGccacCGGc-GCCGCGgCGAGCa -3' miRNA: 3'- -GCCGUUcua-GCCuaCGGCGCgGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 18867 | 0.66 | 0.52595 |
Target: 5'- uCGGCAagcAGAUCaaGGgcGUCGCcggcuGCCGGGCu -3' miRNA: 3'- -GCCGU---UCUAG--CCuaCGGCG-----CGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 17478 | 0.67 | 0.473689 |
Target: 5'- gCGGCA---UCGGccGCCGC-CUGGACg -3' miRNA: 3'- -GCCGUucuAGCCuaCGGCGcGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 28112 | 1.1 | 0.000418 |
Target: 5'- gCGGCAAGAUCGGAUGCCGCGCCGAACa -3' miRNA: 3'- -GCCGUUCUAGCCUACGGCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 1083 | 0.68 | 0.424166 |
Target: 5'- uGcGCAGGucgaCGGcgccauUGCCGaCGCCGAGCa -3' miRNA: 3'- gC-CGUUCua--GCCu-----ACGGC-GCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 6081 | 0.69 | 0.37787 |
Target: 5'- uCGaGCGAGuacgCGGAcgaaggcacgGCCGCGCaCGAGCu -3' miRNA: 3'- -GC-CGUUCua--GCCUa---------CGGCGCG-GCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 12080 | 0.71 | 0.288584 |
Target: 5'- gCGGCAcGAUC----GUCGCGCCGGACg -3' miRNA: 3'- -GCCGUuCUAGccuaCGGCGCGGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 18915 | 0.73 | 0.216735 |
Target: 5'- gCGGCGGGAUggCGGGcgGCUGCGaCGAGCu -3' miRNA: 3'- -GCCGUUCUA--GCCUa-CGGCGCgGCUUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 29769 | 0.66 | 0.522749 |
Target: 5'- gCGGCcGGGUCGGcggacaccaugcgcAUGCCGgCgGCCGucGACg -3' miRNA: 3'- -GCCGuUCUAGCC--------------UACGGC-G-CGGC--UUG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 5920 | 0.66 | 0.558333 |
Target: 5'- gGGCAAGAagccg-GCCGCGCgGAAg -3' miRNA: 3'- gCCGUUCUagccuaCGGCGCGgCUUg -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 35735 | 0.66 | 0.536672 |
Target: 5'- aGGCGuuGUCGGAUccggugccGCCaGCGUCGAugACg -3' miRNA: 3'- gCCGUucUAGCCUA--------CGG-CGCGGCU--UG- -5' |
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28023 | 5' | -56.8 | NC_005887.1 | + | 30274 | 0.67 | 0.494299 |
Target: 5'- cCGGCGcgacGAUCG--UGCCGCGCaCGAc- -3' miRNA: 3'- -GCCGUu---CUAGCcuACGGCGCG-GCUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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