miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 34250 0.7 0.351772
Target:  5'- uCGGCGAGcgCGGcgaGCUGCGCgCGcGCu -3'
miRNA:   3'- -GCCGUUCuaGCCua-CGGCGCG-GCuUG- -5'
28023 5' -56.8 NC_005887.1 + 10194 0.69 0.369027
Target:  5'- aCGGUuucgucGAGugcGUCGcgucGAUGcCCGCGCCGGACg -3'
miRNA:   3'- -GCCG------UUC---UAGC----CUAC-GGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 6081 0.69 0.37787
Target:  5'- uCGaGCGAGuacgCGGAcgaaggcacgGCCGCGCaCGAGCu -3'
miRNA:   3'- -GC-CGUUCua--GCCUa---------CGGCGCG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 25515 0.69 0.377871
Target:  5'- gCGGCGGGuggCGGcauaaucGUCGcCGCCGAGCg -3'
miRNA:   3'- -GCCGUUCua-GCCua-----CGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1950 0.69 0.386855
Target:  5'- cCGGCAc-GUCG---GCCGUGCCGGGCa -3'
miRNA:   3'- -GCCGUucUAGCcuaCGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 40282 0.69 0.386855
Target:  5'- cCGGCAAG-UCGG-UGCCGC-UCGAu- -3'
miRNA:   3'- -GCCGUUCuAGCCuACGGCGcGGCUug -5'
28023 5' -56.8 NC_005887.1 + 12868 0.69 0.386855
Target:  5'- aGGCAcGAccgUGGcagGUGCCGUGCgCGAGCu -3'
miRNA:   3'- gCCGUuCUa--GCC---UACGGCGCG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 40985 0.69 0.395978
Target:  5'- aCGcGCGGGAcaGGAUGuaGCGCuCGAGCg -3'
miRNA:   3'- -GC-CGUUCUagCCUACggCGCG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 39398 0.69 0.395978
Target:  5'- cCGGCGAGGauggucgCGGcgGUGCCGCGgCGcuuGCg -3'
miRNA:   3'- -GCCGUUCUa------GCC--UACGGCGCgGCu--UG- -5'
28023 5' -56.8 NC_005887.1 + 42090 0.69 0.40524
Target:  5'- uCGcGUggGG-CGcGAUGCCGCGUCGAcgaACg -3'
miRNA:   3'- -GC-CGuuCUaGC-CUACGGCGCGGCU---UG- -5'
28023 5' -56.8 NC_005887.1 + 6432 0.68 0.414636
Target:  5'- uGGC-----CGGAcgGCCGCGCCGAGa -3'
miRNA:   3'- gCCGuucuaGCCUa-CGGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 17032 0.68 0.424166
Target:  5'- uGGCAacGGAUCGGAUGCgcagcggcaCGCuugGgCGGACg -3'
miRNA:   3'- gCCGU--UCUAGCCUACG---------GCG---CgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1083 0.68 0.424166
Target:  5'- uGcGCAGGucgaCGGcgccauUGCCGaCGCCGAGCa -3'
miRNA:   3'- gC-CGUUCua--GCCu-----ACGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18623 0.68 0.433825
Target:  5'- uCGGCAGcgcGAUCGGcgGCC-CGCUGcugucGACg -3'
miRNA:   3'- -GCCGUU---CUAGCCuaCGGcGCGGC-----UUG- -5'
28023 5' -56.8 NC_005887.1 + 13724 0.68 0.433825
Target:  5'- aCGGCAAGccgaacaucGUCGcGAUGCCGUacgGCUGGcGCg -3'
miRNA:   3'- -GCCGUUC---------UAGC-CUACGGCG---CGGCU-UG- -5'
28023 5' -56.8 NC_005887.1 + 28904 0.68 0.433825
Target:  5'- aCGGCuacGaAUUGGAUGCgCGCGCCcauuGCg -3'
miRNA:   3'- -GCCGuu-C-UAGCCUACG-GCGCGGcu--UG- -5'
28023 5' -56.8 NC_005887.1 + 38295 0.68 0.433825
Target:  5'- -cGCAAcGGUCaGGGUGCCGuCGCCGu-- -3'
miRNA:   3'- gcCGUU-CUAG-CCUACGGC-GCGGCuug -5'
28023 5' -56.8 NC_005887.1 + 35126 0.68 0.433825
Target:  5'- gGGCGcGGAUCGGAauCCGgCGCCacGGACg -3'
miRNA:   3'- gCCGU-UCUAGCCUacGGC-GCGG--CUUG- -5'
28023 5' -56.8 NC_005887.1 + 1493 0.68 0.44361
Target:  5'- gCGGCGcucGcgCGGcgcgGCCGUGCgGAACa -3'
miRNA:   3'- -GCCGUu--CuaGCCua--CGGCGCGgCUUG- -5'
28023 5' -56.8 NC_005887.1 + 33755 0.68 0.44361
Target:  5'- aCGGCGAGAgcuc--GCCaGCGUCGAACg -3'
miRNA:   3'- -GCCGUUCUagccuaCGG-CGCGGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.