miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 29769 0.66 0.522749
Target:  5'- gCGGCcGGGUCGGcggacaccaugcgcAUGCCGgCgGCCGucGACg -3'
miRNA:   3'- -GCCGuUCUAGCC--------------UACGGC-G-CGGC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 24205 0.67 0.515309
Target:  5'- uCGGCAcGAcgUCGGcgGCCcGCGCUucGCc -3'
miRNA:   3'- -GCCGUuCU--AGCCuaCGG-CGCGGcuUG- -5'
28023 5' -56.8 NC_005887.1 + 802 0.67 0.515309
Target:  5'- uGGCu-GAcuUCGcGUG-CGCGCCGAGCg -3'
miRNA:   3'- gCCGuuCU--AGCcUACgGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14687 0.67 0.515309
Target:  5'- -cGCAcGAUCGGGcucGUCGCGgCGGGCg -3'
miRNA:   3'- gcCGUuCUAGCCUa--CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 27956 0.67 0.515309
Target:  5'- uCGGacAGGUCGuacgcGCgCGCGCCGAGCg -3'
miRNA:   3'- -GCCguUCUAGCcua--CG-GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 8378 0.67 0.51425
Target:  5'- aCGGCGccGGugcugaCGGAcGCCGCacgcgacgugcucGCCGAGCg -3'
miRNA:   3'- -GCCGU--UCua----GCCUaCGGCG-------------CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1831 0.67 0.513192
Target:  5'- aCGGCAucuUCGGcgacacgaaCGCGCCGGACu -3'
miRNA:   3'- -GCCGUucuAGCCuacg-----GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14204 0.67 0.504757
Target:  5'- gGGCGcGGccUCGGAcaggGCgGCGCCGcGCu -3'
miRNA:   3'- gCCGUuCU--AGCCUa---CGgCGCGGCuUG- -5'
28023 5' -56.8 NC_005887.1 + 7447 0.67 0.504757
Target:  5'- uGGCGugcgcgucguGAUCGGcAUGCCGUuCgCGAACg -3'
miRNA:   3'- gCCGUu---------CUAGCC-UACGGCGcG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 39842 0.67 0.504757
Target:  5'- gCGGCAGuc-CGGGUGCacgaGCagGCCGGGCu -3'
miRNA:   3'- -GCCGUUcuaGCCUACGg---CG--CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 30274 0.67 0.494299
Target:  5'- cCGGCGcgacGAUCG--UGCCGCGCaCGAc- -3'
miRNA:   3'- -GCCGUu---CUAGCcuACGGCGCG-GCUug -5'
28023 5' -56.8 NC_005887.1 + 32788 0.67 0.493259
Target:  5'- uGcGCAGGAUCGGcgcgcGCCGCuucacggGCaCGAACa -3'
miRNA:   3'- gC-CGUUCUAGCCua---CGGCG-------CG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 15651 0.67 0.483941
Target:  5'- gGGCGccguGUCGcaGAUG-CGCGCCGAGCu -3'
miRNA:   3'- gCCGUuc--UAGC--CUACgGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 17478 0.67 0.473689
Target:  5'- gCGGCA---UCGGccGCCGC-CUGGACg -3'
miRNA:   3'- -GCCGUucuAGCCuaCGGCGcGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 25361 0.67 0.473689
Target:  5'- uGGC-GGAUCGGcacguaGCCGUaGUCGAGCu -3'
miRNA:   3'- gCCGuUCUAGCCua----CGGCG-CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 5048 0.67 0.463546
Target:  5'- aGGCA----CGGcaaugGCCGCGCCGGAa -3'
miRNA:   3'- gCCGUucuaGCCua---CGGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 5307 0.67 0.463546
Target:  5'- cCGGCAAGAagGG--GCUcaGCGCCGAc- -3'
miRNA:   3'- -GCCGUUCUagCCuaCGG--CGCGGCUug -5'
28023 5' -56.8 NC_005887.1 + 24602 0.67 0.463546
Target:  5'- gGGCGccAUCagccgcGcgGCCGUGCCGAGCg -3'
miRNA:   3'- gCCGUucUAGc-----CuaCGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 16889 0.67 0.463546
Target:  5'- aGGCAacgAGGUUGcaaagGCUGCaGCCGAGCa -3'
miRNA:   3'- gCCGU---UCUAGCcua--CGGCG-CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 17157 0.68 0.453519
Target:  5'- uCGGCgAAGAUCGcGAgGCgugggaGCGCgCGAACg -3'
miRNA:   3'- -GCCG-UUCUAGC-CUaCGg-----CGCG-GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.