miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 37730 0.66 0.580235
Target:  5'- cCGGCGGccacCGGc-GCCGCGgCGAGCa -3'
miRNA:   3'- -GCCGUUcua-GCCuaCGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14993 0.66 0.580235
Target:  5'- cCGcGCAGGccgcaGGcGUGCCGC-CCGAGCu -3'
miRNA:   3'- -GC-CGUUCuag--CC-UACGGCGcGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 5845 0.66 0.580235
Target:  5'- gGGCGAag-CGGAgcucaCCGCGCUGAAa -3'
miRNA:   3'- gCCGUUcuaGCCUac---GGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 33953 0.66 0.569258
Target:  5'- uCGGCGAGcacGUCGcGUGCgGCGuCCGucAGCa -3'
miRNA:   3'- -GCCGUUC---UAGCcUACGgCGC-GGC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 2706 0.66 0.569258
Target:  5'- gCGGCAAG--CGGccgaGCCGCGCgacgaCGGACu -3'
miRNA:   3'- -GCCGUUCuaGCCua--CGGCGCG-----GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 40835 0.66 0.565975
Target:  5'- -aGCAGGucCGGGUacguguuccgcacgGCCGCGCCGcGCg -3'
miRNA:   3'- gcCGUUCuaGCCUA--------------CGGCGCGGCuUG- -5'
28023 5' -56.8 NC_005887.1 + 5920 0.66 0.558333
Target:  5'- gGGCAAGAagccg-GCCGCGCgGAAg -3'
miRNA:   3'- gCCGUUCUagccuaCGGCGCGgCUUg -5'
28023 5' -56.8 NC_005887.1 + 35827 0.66 0.558333
Target:  5'- uCGGCGGGggC-GAUGCCGUcauuGCCguaGAACa -3'
miRNA:   3'- -GCCGUUCuaGcCUACGGCG----CGG---CUUG- -5'
28023 5' -56.8 NC_005887.1 + 30329 0.66 0.558333
Target:  5'- aCGGUugcGAgCGGcGUGCgUGCGCCGGAUg -3'
miRNA:   3'- -GCCGuu-CUaGCC-UACG-GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14345 0.66 0.547469
Target:  5'- gCGGC--GAUCGuGAaGCagCGUGCCGGGCa -3'
miRNA:   3'- -GCCGuuCUAGC-CUaCG--GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 2228 0.66 0.547469
Target:  5'- uGGCGcauccGGUCGGAagucGUCGCGaCGAGCa -3'
miRNA:   3'- gCCGUu----CUAGCCUa---CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 1147 0.66 0.547469
Target:  5'- gGGCAcgacgacgcgcGGGUCGGAUGCa--GCCaGGCg -3'
miRNA:   3'- gCCGU-----------UCUAGCCUACGgcgCGGcUUG- -5'
28023 5' -56.8 NC_005887.1 + 27032 0.66 0.536672
Target:  5'- uCGGCGAGcgCGcGAccgcgcacgcUGCCGC-CCGAc- -3'
miRNA:   3'- -GCCGUUCuaGC-CU----------ACGGCGcGGCUug -5'
28023 5' -56.8 NC_005887.1 + 18539 0.66 0.536672
Target:  5'- gGGCGuucucGGUgGGcgGCgGCGCCGGc- -3'
miRNA:   3'- gCCGUu----CUAgCCuaCGgCGCGGCUug -5'
28023 5' -56.8 NC_005887.1 + 625 0.66 0.536672
Target:  5'- gCGcCGGGAUCGGAUcGCCGC-CCGu-- -3'
miRNA:   3'- -GCcGUUCUAGCCUA-CGGCGcGGCuug -5'
28023 5' -56.8 NC_005887.1 + 35735 0.66 0.536672
Target:  5'- aGGCGuuGUCGGAUccggugccGCCaGCGUCGAugACg -3'
miRNA:   3'- gCCGUucUAGCCUA--------CGG-CGCGGCU--UG- -5'
28023 5' -56.8 NC_005887.1 + 17333 0.66 0.536672
Target:  5'- cCGGCu-GGcCGGcgGCCGCcgGCgCGAGCu -3'
miRNA:   3'- -GCCGuuCUaGCCuaCGGCG--CG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18867 0.66 0.52595
Target:  5'- uCGGCAagcAGAUCaaGGgcGUCGCcggcuGCCGGGCu -3'
miRNA:   3'- -GCCGU---UCUAG--CCuaCGGCG-----CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18137 0.66 0.52595
Target:  5'- cCGGCgAAGcgCGGGccgccgacGUCGUGCCGAAg -3'
miRNA:   3'- -GCCG-UUCuaGCCUa-------CGGCGCGGCUUg -5'
28023 5' -56.8 NC_005887.1 + 957 0.66 0.52595
Target:  5'- uCGGCAucGUCGGAgaacacGUCGCGCacggucugcuCGAACg -3'
miRNA:   3'- -GCCGUucUAGCCUa-----CGGCGCG----------GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.