miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 28112 1.1 0.000418
Target:  5'- gCGGCAAGAUCGGAUGCCGCGCCGAACa -3'
miRNA:   3'- -GCCGUUCUAGCCUACGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 29022 0.77 0.117818
Target:  5'- gCGGCGAGAUcCGcGAUGCgGCcggcguuGCCGAACg -3'
miRNA:   3'- -GCCGUUCUA-GC-CUACGgCG-------CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14544 0.73 0.199992
Target:  5'- gCGGCGcgucGAUCGGcAUGUCGCGCgCGGAa -3'
miRNA:   3'- -GCCGUu---CUAGCC-UACGGCGCG-GCUUg -5'
28023 5' -56.8 NC_005887.1 + 39504 0.73 0.205444
Target:  5'- gCGGCAuugGGAugUCGGGUGCaC-CGCUGAACa -3'
miRNA:   3'- -GCCGU---UCU--AGCCUACG-GcGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 18915 0.73 0.216735
Target:  5'- gCGGCGGGAUggCGGGcgGCUGCGaCGAGCu -3'
miRNA:   3'- -GCCGUUCUA--GCCUa-CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 36906 0.73 0.228554
Target:  5'- gCGGCAGGAgugccagCGGGcgcgugGUCGCGCCGGucGCu -3'
miRNA:   3'- -GCCGUUCUa------GCCUa-----CGGCGCGGCU--UG- -5'
28023 5' -56.8 NC_005887.1 + 17275 0.72 0.247298
Target:  5'- gGGCGAGAcgUCGGGcggcGCCGCGCgCGcaAACg -3'
miRNA:   3'- gCCGUUCU--AGCCUa---CGGCGCG-GC--UUG- -5'
28023 5' -56.8 NC_005887.1 + 3173 0.72 0.247298
Target:  5'- uCGaCAAGuUCGGGcagcUGCCGCGcCCGGACa -3'
miRNA:   3'- -GCcGUUCuAGCCU----ACGGCGC-GGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 13624 0.72 0.267298
Target:  5'- gCGGCGcg--CGGcgGCCGCacucaGCCGAGCa -3'
miRNA:   3'- -GCCGUucuaGCCuaCGGCG-----CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 23441 0.71 0.274249
Target:  5'- uCGGUGAGcgcugCGGGcUGCCgGUGCCGGGCg -3'
miRNA:   3'- -GCCGUUCua---GCCU-ACGG-CGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 37850 0.71 0.274249
Target:  5'- uCGGCGAGcagacgCGcGAUGCgCGCGCCGuucgGCa -3'
miRNA:   3'- -GCCGUUCua----GC-CUACG-GCGCGGCu---UG- -5'
28023 5' -56.8 NC_005887.1 + 29762 0.71 0.281344
Target:  5'- cCGGCGAgcuGAUCgcgaGGAUcGCCGCGUCGcGCa -3'
miRNA:   3'- -GCCGUU---CUAG----CCUA-CGGCGCGGCuUG- -5'
28023 5' -56.8 NC_005887.1 + 12080 0.71 0.288584
Target:  5'- gCGGCAcGAUC----GUCGCGCCGGACg -3'
miRNA:   3'- -GCCGUuCUAGccuaCGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 33391 0.71 0.303502
Target:  5'- gCGGCAGGAugaggcucaUCGcGGUGCguagauacCGCGaCCGAGCa -3'
miRNA:   3'- -GCCGUUCU---------AGC-CUACG--------GCGC-GGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 10545 0.7 0.326977
Target:  5'- gGGCAugAGGUUGGAUGCgGCGgCaGACc -3'
miRNA:   3'- gCCGU--UCUAGCCUACGgCGCgGcUUG- -5'
28023 5' -56.8 NC_005887.1 + 4794 0.7 0.334278
Target:  5'- cCGGCGAGGccgugcucgCGGAucucgcgcaguucUGCCGCGCC-AACc -3'
miRNA:   3'- -GCCGUUCUa--------GCCU-------------ACGGCGCGGcUUG- -5'
28023 5' -56.8 NC_005887.1 + 16246 0.7 0.335096
Target:  5'- cCGGCGAGcgcaCGGGcaCCGuCGCCGAGCu -3'
miRNA:   3'- -GCCGUUCua--GCCUacGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 16491 0.7 0.335096
Target:  5'- cCGGCGGGcugGUCGGcgAUGUCGCagGCCGAucGCg -3'
miRNA:   3'- -GCCGUUC---UAGCC--UACGGCG--CGGCU--UG- -5'
28023 5' -56.8 NC_005887.1 + 4686 0.7 0.343361
Target:  5'- aCGGCgAGGGUCuGAUgGgCGCGCCGAu- -3'
miRNA:   3'- -GCCG-UUCUAGcCUA-CgGCGCGGCUug -5'
28023 5' -56.8 NC_005887.1 + 27726 0.7 0.346708
Target:  5'- aCGGCGgucaggccguaguagAGA-CGGAagugGCCGaUGCCGAGCg -3'
miRNA:   3'- -GCCGU---------------UCUaGCCUa---CGGC-GCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.