miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28023 5' -56.8 NC_005887.1 + 7124 0.68 0.453519
Target:  5'- aGGCGGGG-CGGcgcUGCgGCGCCGuucAACu -3'
miRNA:   3'- gCCGUUCUaGCCu--ACGgCGCGGC---UUG- -5'
28023 5' -56.8 NC_005887.1 + 7447 0.67 0.504757
Target:  5'- uGGCGugcgcgucguGAUCGGcAUGCCGUuCgCGAACg -3'
miRNA:   3'- gCCGUu---------CUAGCC-UACGGCGcG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 8378 0.67 0.51425
Target:  5'- aCGGCGccGGugcugaCGGAcGCCGCacgcgacgugcucGCCGAGCg -3'
miRNA:   3'- -GCCGU--UCua----GCCUaCGGCG-------------CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 10194 0.69 0.369027
Target:  5'- aCGGUuucgucGAGugcGUCGcgucGAUGcCCGCGCCGGACg -3'
miRNA:   3'- -GCCG------UUC---UAGC----CUAC-GGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 10545 0.7 0.326977
Target:  5'- gGGCAugAGGUUGGAUGCgGCGgCaGACc -3'
miRNA:   3'- gCCGU--UCUAGCCUACGgCGCgGcUUG- -5'
28023 5' -56.8 NC_005887.1 + 12080 0.71 0.288584
Target:  5'- gCGGCAcGAUC----GUCGCGCCGGACg -3'
miRNA:   3'- -GCCGUuCUAGccuaCGGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 12868 0.69 0.386855
Target:  5'- aGGCAcGAccgUGGcagGUGCCGUGCgCGAGCu -3'
miRNA:   3'- gCCGUuCUa--GCC---UACGGCGCG-GCUUG- -5'
28023 5' -56.8 NC_005887.1 + 13624 0.72 0.267298
Target:  5'- gCGGCGcg--CGGcgGCCGCacucaGCCGAGCa -3'
miRNA:   3'- -GCCGUucuaGCCuaCGGCG-----CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 13724 0.68 0.433825
Target:  5'- aCGGCAAGccgaacaucGUCGcGAUGCCGUacgGCUGGcGCg -3'
miRNA:   3'- -GCCGUUC---------UAGC-CUACGGCG---CGGCU-UG- -5'
28023 5' -56.8 NC_005887.1 + 14204 0.67 0.504757
Target:  5'- gGGCGcGGccUCGGAcaggGCgGCGCCGcGCu -3'
miRNA:   3'- gCCGUuCU--AGCCUa---CGgCGCGGCuUG- -5'
28023 5' -56.8 NC_005887.1 + 14345 0.66 0.547469
Target:  5'- gCGGC--GAUCGuGAaGCagCGUGCCGGGCa -3'
miRNA:   3'- -GCCGuuCUAGC-CUaCG--GCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14544 0.73 0.199992
Target:  5'- gCGGCGcgucGAUCGGcAUGUCGCGCgCGGAa -3'
miRNA:   3'- -GCCGUu---CUAGCC-UACGGCGCG-GCUUg -5'
28023 5' -56.8 NC_005887.1 + 14687 0.67 0.515309
Target:  5'- -cGCAcGAUCGGGcucGUCGCGgCGGGCg -3'
miRNA:   3'- gcCGUuCUAGCCUa--CGGCGCgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 14993 0.66 0.580235
Target:  5'- cCGcGCAGGccgcaGGcGUGCCGC-CCGAGCu -3'
miRNA:   3'- -GC-CGUUCuag--CC-UACGGCGcGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 15651 0.67 0.483941
Target:  5'- gGGCGccguGUCGcaGAUG-CGCGCCGAGCu -3'
miRNA:   3'- gCCGUuc--UAGC--CUACgGCGCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 16246 0.7 0.335096
Target:  5'- cCGGCGAGcgcaCGGGcaCCGuCGCCGAGCu -3'
miRNA:   3'- -GCCGUUCua--GCCUacGGC-GCGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 16491 0.7 0.335096
Target:  5'- cCGGCGGGcugGUCGGcgAUGUCGCagGCCGAucGCg -3'
miRNA:   3'- -GCCGUUC---UAGCC--UACGGCG--CGGCU--UG- -5'
28023 5' -56.8 NC_005887.1 + 16889 0.67 0.463546
Target:  5'- aGGCAacgAGGUUGcaaagGCUGCaGCCGAGCa -3'
miRNA:   3'- gCCGU---UCUAGCcua--CGGCG-CGGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 17032 0.68 0.424166
Target:  5'- uGGCAacGGAUCGGAUGCgcagcggcaCGCuugGgCGGACg -3'
miRNA:   3'- gCCGU--UCUAGCCUACG---------GCG---CgGCUUG- -5'
28023 5' -56.8 NC_005887.1 + 17157 0.68 0.453519
Target:  5'- uCGGCgAAGAUCGcGAgGCgugggaGCGCgCGAACg -3'
miRNA:   3'- -GCCG-UUCUAGC-CUaCGg-----CGCG-GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.