miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28024 5' -56.3 NC_005887.1 + 40865 0.69 0.382718
Target:  5'- -gCGCCGCGcgagCGCCgcacGCc-GUCGGCg -3'
miRNA:   3'- uaGCGGCGCaa--GUGGa---CGaaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 40161 0.68 0.449603
Target:  5'- cUCGCCGCGUgugAgCUGCgcGaCGGCa -3'
miRNA:   3'- uAGCGGCGCAag-UgGACGaaCaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 39478 0.68 0.46987
Target:  5'- cGUCGCCugcGCGUUauccacCGCCUGCggcauugggaUGUCGGg -3'
miRNA:   3'- -UAGCGG---CGCAA------GUGGACGa---------ACAGCCg -5'
28024 5' -56.3 NC_005887.1 + 39419 0.66 0.544108
Target:  5'- -gUGCCGCGgcgcuugCGCa-GCUUGgCGGCg -3'
miRNA:   3'- uaGCGGCGCaa-----GUGgaCGAACaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 38011 0.66 0.566062
Target:  5'- -gCGCCgGCGUcgaUCAguuCCUGCggcaUGUcCGGCa -3'
miRNA:   3'- uaGCGG-CGCA---AGU---GGACGa---ACA-GCCG- -5'
28024 5' -56.3 NC_005887.1 + 37944 0.68 0.46987
Target:  5'- gAUCGCCGCGccUUCGCCggcgcgcauUGcCUUGUUcaacgGGCu -3'
miRNA:   3'- -UAGCGGCGC--AAGUGG---------AC-GAACAG-----CCG- -5'
28024 5' -56.3 NC_005887.1 + 37743 0.66 0.566062
Target:  5'- -gCGCCGCGgcgagCAUCUGUUgcaucUGcgCGGCc -3'
miRNA:   3'- uaGCGGCGCaa---GUGGACGA-----ACa-GCCG- -5'
28024 5' -56.3 NC_005887.1 + 37351 0.72 0.263215
Target:  5'- gGUCGCCGCau---CCUGCUUuuuugcagcGUCGGCu -3'
miRNA:   3'- -UAGCGGCGcaaguGGACGAA---------CAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 37162 0.69 0.391863
Target:  5'- gAUCaGCCGCuucacGUUCuCCUGC--GUCGGCu -3'
miRNA:   3'- -UAG-CGGCG-----CAAGuGGACGaaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 35835 0.75 0.15302
Target:  5'- -gCGCCGCGUcggcguagaucaUCGCCUGCggaUUGcgcUCGGCa -3'
miRNA:   3'- uaGCGGCGCA------------AGUGGACG---AAC---AGCCG- -5'
28024 5' -56.3 NC_005887.1 + 35212 0.69 0.410572
Target:  5'- uUCGuuGCGca-GCa-GCUUGUCGGCc -3'
miRNA:   3'- uAGCggCGCaagUGgaCGAACAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 34632 0.66 0.587125
Target:  5'- uUCGCCGUucgcgucgacgagGcgCGCCgGCUUGcCGGUu -3'
miRNA:   3'- uAGCGGCG-------------CaaGUGGaCGAACaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 34575 0.7 0.322788
Target:  5'- gAUCGUCGCGUUCACgUaGCa-GcCGGCg -3'
miRNA:   3'- -UAGCGGCGCAAGUGgA-CGaaCaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 34460 0.68 0.420133
Target:  5'- gAUCGUCGCcg--GCCUGCUcGUCGGa -3'
miRNA:   3'- -UAGCGGCGcaagUGGACGAaCAGCCg -5'
28024 5' -56.3 NC_005887.1 + 33765 0.66 0.555053
Target:  5'- cUCGCCaGCGUcgaacgaaACCUGCUg--CGGUg -3'
miRNA:   3'- uAGCGG-CGCAag------UGGACGAacaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 33532 0.7 0.35615
Target:  5'- gAUCaCCGUGagCGCCUGCUUcugGUCGGg -3'
miRNA:   3'- -UAGcGGCGCaaGUGGACGAA---CAGCCg -5'
28024 5' -56.3 NC_005887.1 + 32656 0.69 0.401148
Target:  5'- gAUCGCUGag-UCAucggUCUGCUgGUCGGCg -3'
miRNA:   3'- -UAGCGGCgcaAGU----GGACGAaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 30738 0.68 0.420133
Target:  5'- -gCGCaCGCucugCACCUGCgUGUCGaGCg -3'
miRNA:   3'- uaGCG-GCGcaa-GUGGACGaACAGC-CG- -5'
28024 5' -56.3 NC_005887.1 + 29373 0.66 0.533235
Target:  5'- -gUGCCGCGggUCGCC-GCU--UCGGUc -3'
miRNA:   3'- uaGCGGCGCa-AGUGGaCGAacAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 29281 0.66 0.544108
Target:  5'- -gCGCCGCGUUCcacggAUCgGCcUUGUacgCGGCg -3'
miRNA:   3'- uaGCGGCGCAAG-----UGGaCG-AACA---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.