Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28024 | 5' | -56.3 | NC_005887.1 | + | 28567 | 0.73 | 0.230717 |
Target: 5'- uUCGCgGCGgUgACCUGCUUcaCGGCg -3' miRNA: 3'- uAGCGgCGCaAgUGGACGAAcaGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 28305 | 0.66 | 0.566062 |
Target: 5'- cGUCGUgGCGacUugUUGCUggaagccuguUGUCGGCg -3' miRNA: 3'- -UAGCGgCGCaaGugGACGA----------ACAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 28021 | 1.1 | 0.000411 |
Target: 5'- gAUCGCCGCGUUCACCUGCUUGUCGGCg -3' miRNA: 3'- -UAGCGGCGCAAGUGGACGAACAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 27201 | 0.69 | 0.373717 |
Target: 5'- -aUGCCGuCGagCGCCUGCaugggGUCGGUc -3' miRNA: 3'- uaGCGGC-GCaaGUGGACGaa---CAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 27092 | 0.73 | 0.23946 |
Target: 5'- cUCGCCGCGcagCacugcggcuGCCUGCUUcgggccgccguuguaGUCGGCg -3' miRNA: 3'- uAGCGGCGCaa-G---------UGGACGAA---------------CAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 26634 | 0.67 | 0.500055 |
Target: 5'- cUCGCCGCGUUCaugGCCUcgaucggGCUgucGUCGa- -3' miRNA: 3'- uAGCGGCGCAAG---UGGA-------CGAa--CAGCcg -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 26566 | 0.73 | 0.230717 |
Target: 5'- uGUCGCUGcCGUcgUCcuCCUGCUUGUagaCGGCg -3' miRNA: 3'- -UAGCGGC-GCA--AGu-GGACGAACA---GCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 25499 | 0.69 | 0.410572 |
Target: 5'- -gCGCCGCGguaCACCUcGCggaugaUGUCGcGCu -3' miRNA: 3'- uaGCGGCGCaa-GUGGA-CGa-----ACAGC-CG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 25115 | 0.67 | 0.522439 |
Target: 5'- -aCGCCGcCGUacgcgaUCGugucccacacgcCCUGCUUGcgCGGCg -3' miRNA: 3'- uaGCGGC-GCA------AGU------------GGACGAACa-GCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 24571 | 0.67 | 0.522439 |
Target: 5'- gAUCGCCGUcagcuucaCACCUGCgcaUGgguucgCGGCg -3' miRNA: 3'- -UAGCGGCGcaa-----GUGGACGa--ACa-----GCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 23780 | 0.66 | 0.577126 |
Target: 5'- -aCGCCGCGacgagcaugUCGCCcGCgaaGcCGGCg -3' miRNA: 3'- uaGCGGCGCa--------AGUGGaCGaa-CaGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 23748 | 0.71 | 0.299334 |
Target: 5'- uAUCGCUGCGcgUCACUuuccacagcgaUGCUUGUuccaUGGCa -3' miRNA: 3'- -UAGCGGCGCa-AGUGG-----------ACGAACA----GCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 22991 | 0.66 | 0.544108 |
Target: 5'- cGUCGCCGCacgcgUCugCUGCgcgagcaugGUCaGCu -3' miRNA: 3'- -UAGCGGCGca---AGugGACGaa-------CAGcCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 21228 | 0.67 | 0.490592 |
Target: 5'- uUCGUgGCGUUggcgagCACCgUGUUUG-CGGCg -3' miRNA: 3'- uAGCGgCGCAA------GUGG-ACGAACaGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 19119 | 0.7 | 0.339171 |
Target: 5'- -cCGCCGcCGcUCGCgUGCc-GUCGGCg -3' miRNA: 3'- uaGCGGC-GCaAGUGgACGaaCAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 18778 | 0.73 | 0.236935 |
Target: 5'- --aGUCGCGUUCGCaCUGCcgGcCGGCg -3' miRNA: 3'- uagCGGCGCAAGUG-GACGaaCaGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 16334 | 0.73 | 0.212888 |
Target: 5'- gGUCGCCGCGaacugcUUCAUCaGCUUGggaGGCu -3' miRNA: 3'- -UAGCGGCGC------AAGUGGaCGAACag-CCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 14542 | 0.67 | 0.499 |
Target: 5'- --aGCCGCuaucuauucccUCGCCUGC--GUCGGCg -3' miRNA: 3'- uagCGGCGca---------AGUGGACGaaCAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 12060 | 0.67 | 0.501112 |
Target: 5'- -gCGCCGCG--CugCaGCagGUCGGCa -3' miRNA: 3'- uaGCGGCGCaaGugGaCGaaCAGCCG- -5' |
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28024 | 5' | -56.3 | NC_005887.1 | + | 9245 | 0.68 | 0.429827 |
Target: 5'- -gCGCCGCGUcggcgaucgcgUCuAUCUGUgcacggcgGUCGGCa -3' miRNA: 3'- uaGCGGCGCA-----------AG-UGGACGaa------CAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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