Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28024 | 5' | -56.3 | NC_005887.1 | + | 37743 | 0.66 | 0.566062 |
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Target: 5'- -gCGCCGCGgcgagCAUCUGUUgcaucUGcgCGGCc -3' miRNA: 3'- uaGCGGCGCaa---GUGGACGA-----ACa-GCCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 37944 | 0.68 | 0.46987 |
|
Target: 5'- gAUCGCCGCGccUUCGCCggcgcgcauUGcCUUGUUcaacgGGCu -3' miRNA: 3'- -UAGCGGCGC--AAGUGG---------AC-GAACAG-----CCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 38011 | 0.66 | 0.566062 |
|
Target: 5'- -gCGCCgGCGUcgaUCAguuCCUGCggcaUGUcCGGCa -3' miRNA: 3'- uaGCGG-CGCA---AGU---GGACGa---ACA-GCCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 39419 | 0.66 | 0.544108 |
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Target: 5'- -gUGCCGCGgcgcuugCGCa-GCUUGgCGGCg -3' miRNA: 3'- uaGCGGCGCaa-----GUGgaCGAACaGCCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 39478 | 0.68 | 0.46987 |
|
Target: 5'- cGUCGCCugcGCGUUauccacCGCCUGCggcauugggaUGUCGGg -3' miRNA: 3'- -UAGCGG---CGCAA------GUGGACGa---------ACAGCCg -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 40161 | 0.68 | 0.449603 |
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Target: 5'- cUCGCCGCGUgugAgCUGCgcGaCGGCa -3' miRNA: 3'- uAGCGGCGCAag-UgGACGaaCaGCCG- -5' |
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| 28024 | 5' | -56.3 | NC_005887.1 | + | 40865 | 0.69 | 0.382718 |
|
Target: 5'- -gCGCCGCGcgagCGCCgcacGCc-GUCGGCg -3' miRNA: 3'- uaGCGGCGCaa--GUGGa---CGaaCAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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