miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 23925 0.66 0.362842
Target:  5'- -cGCGCcgaucagCGUCGUGCugacgacGGCGCcGCGGCg -3'
miRNA:   3'- ccUGCGa------GCGGCGCG-------UCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 20913 0.66 0.355329
Target:  5'- cGACGCugagagcgucgUCGCCGaaacaGCGGCAggUGUGGUg -3'
miRNA:   3'- cCUGCG-----------AGCGGCg----CGUCGUg-ACGCCG- -5'
28025 3' -61 NC_005887.1 + 21266 0.66 0.355329
Target:  5'- gGGGCaccGCggcgGCgGCGUAuGCGCUGCuGGCg -3'
miRNA:   3'- -CCUG---CGag--CGgCGCGU-CGUGACG-CCG- -5'
28025 3' -61 NC_005887.1 + 37055 0.66 0.355329
Target:  5'- uGGCGUagaacuUCGCCGCGCgcugcucgGGCgACUGCGu- -3'
miRNA:   3'- cCUGCG------AGCGGCGCG--------UCG-UGACGCcg -5'
28025 3' -61 NC_005887.1 + 712 0.66 0.355329
Target:  5'- -aGCGUgCGCCGCGCAGaCGCaGCagauccucacgGGCc -3'
miRNA:   3'- ccUGCGaGCGGCGCGUC-GUGaCG-----------CCG- -5'
28025 3' -61 NC_005887.1 + 22224 0.66 0.354501
Target:  5'- cGGugGCccgcugaUCGUCGCGUGGUucacgaucagcgACgGUGGCg -3'
miRNA:   3'- -CCugCG-------AGCGGCGCGUCG------------UGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 42019 0.66 0.350381
Target:  5'- cGACgGCUCGCgCacuuccucgguguacGCGC-GCACcGCGGCc -3'
miRNA:   3'- cCUG-CGAGCG-G---------------CGCGuCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 42056 0.66 0.34711
Target:  5'- uGGACcuGCUCGCCGacuggaucgaCG-AGCGCUGUcGCg -3'
miRNA:   3'- -CCUG--CGAGCGGC----------GCgUCGUGACGcCG- -5'
28025 3' -61 NC_005887.1 + 25141 0.66 0.34711
Target:  5'- -cACGCccUGCuUGCGCGGCGCaacauugccgcgUGCGGCc -3'
miRNA:   3'- ccUGCGa-GCG-GCGCGUCGUG------------ACGCCG- -5'
28025 3' -61 NC_005887.1 + 4591 0.66 0.34711
Target:  5'- aGGCGCagGCCGCGCAGa--UGCa-- -3'
miRNA:   3'- cCUGCGagCGGCGCGUCgugACGccg -5'
28025 3' -61 NC_005887.1 + 42192 0.66 0.34711
Target:  5'- -cGCGCUgGCuCGuCGCAuuGCUGCGcGCg -3'
miRNA:   3'- ccUGCGAgCG-GC-GCGUcgUGACGC-CG- -5'
28025 3' -61 NC_005887.1 + 25019 0.66 0.346296
Target:  5'- -uGCGCgucagcaUCGCggaaGUGCAGCAC-GCGGUg -3'
miRNA:   3'- ccUGCG-------AGCGg---CGCGUCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 4117 0.66 0.343861
Target:  5'- -aGCGCUCGaccaucccggccaCGCGCAagGCUGCGcGCg -3'
miRNA:   3'- ccUGCGAGCg------------GCGCGUcgUGACGC-CG- -5'
28025 3' -61 NC_005887.1 + 26738 0.66 0.339028
Target:  5'- cGGcCGCcUGCUGCGCGacgcccguGCGCUGCgucucagcuucGGCg -3'
miRNA:   3'- -CCuGCGaGCGGCGCGU--------CGUGACG-----------CCG- -5'
28025 3' -61 NC_005887.1 + 20774 0.66 0.339028
Target:  5'- cGACGa-UGCCG-GCAGUACUGgaUGGCg -3'
miRNA:   3'- cCUGCgaGCGGCgCGUCGUGAC--GCCG- -5'
28025 3' -61 NC_005887.1 + 24945 0.66 0.339028
Target:  5'- cGACGCgugCGCgCGgGCcgccuuGCGC-GCGGCc -3'
miRNA:   3'- cCUGCGa--GCG-GCgCGu-----CGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 30760 0.66 0.339028
Target:  5'- cGGucaGCUCGaccgugCGCGCGGCGaguuccuuCUGCGcGCg -3'
miRNA:   3'- -CCug-CGAGCg-----GCGCGUCGU--------GACGC-CG- -5'
28025 3' -61 NC_005887.1 + 3843 0.66 0.339028
Target:  5'- cGGGCGCUucuaCGUCG-GCAccgacgauguGUACgGCGGCa -3'
miRNA:   3'- -CCUGCGA----GCGGCgCGU----------CGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 38991 0.67 0.334245
Target:  5'- cGAUGCUggCGgauuguuucgugccaCCGCGCAGUcgACgGCGGCu -3'
miRNA:   3'- cCUGCGA--GC---------------GGCGCGUCG--UGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 12369 0.67 0.331084
Target:  5'- cGugGCagGCCGaGCAGCACcGC-GCa -3'
miRNA:   3'- cCugCGagCGGCgCGUCGUGaCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.