miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 16468 0.76 0.075054
Target:  5'- -uGCGCUCGaCCGCGCGGCaggauccggcggGCUGguCGGCg -3'
miRNA:   3'- ccUGCGAGC-GGCGCGUCG------------UGAC--GCCG- -5'
28025 3' -61 NC_005887.1 + 2921 0.75 0.081656
Target:  5'- cGACGC-CGCCgccaagcuGCGCaAGCGCcGCGGCa -3'
miRNA:   3'- cCUGCGaGCGG--------CGCG-UCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 11715 0.75 0.091326
Target:  5'- aGAuCGCuUCGCCGCGC-GCACgGCGcGCa -3'
miRNA:   3'- cCU-GCG-AGCGGCGCGuCGUGaCGC-CG- -5'
28025 3' -61 NC_005887.1 + 10026 0.74 0.093908
Target:  5'- -cGCGCg-GCCGCGCuGGCACgaacaGCGGCa -3'
miRNA:   3'- ccUGCGagCGGCGCG-UCGUGa----CGCCG- -5'
28025 3' -61 NC_005887.1 + 7018 0.74 0.096559
Target:  5'- cGugGC-CgGCCGcCGCGGCGC-GCGGCa -3'
miRNA:   3'- cCugCGaG-CGGC-GCGUCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 8559 0.74 0.102075
Target:  5'- aGGGCGCaUGCCGaagGCAGCACcGCaGCa -3'
miRNA:   3'- -CCUGCGaGCGGCg--CGUCGUGaCGcCG- -5'
28025 3' -61 NC_005887.1 + 4246 0.74 0.104943
Target:  5'- cGACGCUCgGCCGCacGCAGUcugaACUGCucGGCc -3'
miRNA:   3'- cCUGCGAG-CGGCG--CGUCG----UGACG--CCG- -5'
28025 3' -61 NC_005887.1 + 37866 0.74 0.107887
Target:  5'- cGAUGCgcgCGCCGUuCGGCACcuucGCGGCa -3'
miRNA:   3'- cCUGCGa--GCGGCGcGUCGUGa---CGCCG- -5'
28025 3' -61 NC_005887.1 + 40157 0.74 0.107887
Target:  5'- -cGCGCUCGCCGCGUgugagcuGCGC-GaCGGCa -3'
miRNA:   3'- ccUGCGAGCGGCGCGu------CGUGaC-GCCG- -5'
28025 3' -61 NC_005887.1 + 39404 0.74 0.107887
Target:  5'- aGGAUGgUCGCgGCGguGC-C-GCGGCg -3'
miRNA:   3'- -CCUGCgAGCGgCGCguCGuGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 39779 0.73 0.114008
Target:  5'- --cCGCUCGCCGCucaCGGCcaUGCGGCg -3'
miRNA:   3'- ccuGCGAGCGGCGc--GUCGugACGCCG- -5'
28025 3' -61 NC_005887.1 + 27231 0.73 0.114008
Target:  5'- cGGGCGCaUCGCgGCGCAacuGCAUcGCGcGCc -3'
miRNA:   3'- -CCUGCG-AGCGgCGCGU---CGUGaCGC-CG- -5'
28025 3' -61 NC_005887.1 + 2523 0.73 0.117189
Target:  5'- cGGACuGCcgcaCGCUGCGCaaGGCGCUGUcgGGCg -3'
miRNA:   3'- -CCUG-CGa---GCGGCGCG--UCGUGACG--CCG- -5'
28025 3' -61 NC_005887.1 + 25062 0.73 0.119464
Target:  5'- cGGCGUUUGCgCGCGCGGCGCcGCccgacgucucgcccGGCa -3'
miRNA:   3'- cCUGCGAGCG-GCGCGUCGUGaCG--------------CCG- -5'
28025 3' -61 NC_005887.1 + 12599 0.73 0.120122
Target:  5'- cGAUcaGCUCGCCGgGCAagaccguGCACgcGCGGCg -3'
miRNA:   3'- cCUG--CGAGCGGCgCGU-------CGUGa-CGCCG- -5'
28025 3' -61 NC_005887.1 + 13613 0.73 0.120452
Target:  5'- --cUGCUgGCaGCGCGGCGCgcgGCGGCc -3'
miRNA:   3'- ccuGCGAgCGgCGCGUCGUGa--CGCCG- -5'
28025 3' -61 NC_005887.1 + 13379 0.73 0.120452
Target:  5'- uGGCGCUCgcgcugaagGCCgGCGCGGCggACgucgGCGGCa -3'
miRNA:   3'- cCUGCGAG---------CGG-CGCGUCG--UGa---CGCCG- -5'
28025 3' -61 NC_005887.1 + 14220 0.73 0.1238
Target:  5'- aGGGCGg-CGCCGCGCuGUucgGC-GCGGCa -3'
miRNA:   3'- -CCUGCgaGCGGCGCGuCG---UGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 13157 0.73 0.1238
Target:  5'- cGuCGCUUGCCGCGCGcGCGCagacaGCGGg -3'
miRNA:   3'- cCuGCGAGCGGCGCGU-CGUGa----CGCCg -5'
28025 3' -61 NC_005887.1 + 32833 0.73 0.127234
Target:  5'- cGACGUgauggcCGCCGUGCAGguCaaGCGGCa -3'
miRNA:   3'- cCUGCGa-----GCGGCGCGUCguGa-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.