miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 4117 0.66 0.343861
Target:  5'- -aGCGCUCGaccaucccggccaCGCGCAagGCUGCGcGCg -3'
miRNA:   3'- ccUGCGAGCg------------GCGCGUcgUGACGC-CG- -5'
28025 3' -61 NC_005887.1 + 4246 0.74 0.104943
Target:  5'- cGACGCUCgGCCGCacGCAGUcugaACUGCucGGCc -3'
miRNA:   3'- cCUGCGAG-CGGCG--CGUCG----UGACG--CCG- -5'
28025 3' -61 NC_005887.1 + 4591 0.66 0.34711
Target:  5'- aGGCGCagGCCGCGCAGa--UGCa-- -3'
miRNA:   3'- cCUGCGagCGGCGCGUCgugACGccg -5'
28025 3' -61 NC_005887.1 + 4615 0.76 0.07094
Target:  5'- aGAUGCUCGCCGCG--GCGCcgGUGGCc -3'
miRNA:   3'- cCUGCGAGCGGCGCguCGUGa-CGCCG- -5'
28025 3' -61 NC_005887.1 + 4664 0.66 0.380798
Target:  5'- cGACGCgcagacCGCUGCGCAGa----CGGCg -3'
miRNA:   3'- cCUGCGa-----GCGGCGCGUCgugacGCCG- -5'
28025 3' -61 NC_005887.1 + 4805 0.67 0.331084
Target:  5'- --gUGCUCGCggaucuCGCGCAGUuCUGCcGCg -3'
miRNA:   3'- ccuGCGAGCG------GCGCGUCGuGACGcCG- -5'
28025 3' -61 NC_005887.1 + 5010 0.67 0.300686
Target:  5'- aGGAUGCggcgaccgaUGCCaGUGcCGGCGCUGCuGCg -3'
miRNA:   3'- -CCUGCGa--------GCGG-CGC-GUCGUGACGcCG- -5'
28025 3' -61 NC_005887.1 + 5172 0.7 0.190338
Target:  5'- aGGACGCcgaGCCGaCGCAGgagaACgugaaGCGGCu -3'
miRNA:   3'- -CCUGCGag-CGGC-GCGUCg---UGa----CGCCG- -5'
28025 3' -61 NC_005887.1 + 5279 0.71 0.158029
Target:  5'- -aACGCagUCGCCcgaGCAGCGC-GCGGCg -3'
miRNA:   3'- ccUGCG--AGCGGcg-CGUCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 5478 0.71 0.158029
Target:  5'- cGACGCagGCCgaugGCGCAGCACcgGCcGCa -3'
miRNA:   3'- cCUGCGagCGG----CGCGUCGUGa-CGcCG- -5'
28025 3' -61 NC_005887.1 + 5600 0.67 0.300686
Target:  5'- uGGAa-CcUGCCGCGCGGCAU--CGGCa -3'
miRNA:   3'- -CCUgcGaGCGGCGCGUCGUGacGCCG- -5'
28025 3' -61 NC_005887.1 + 5772 0.67 0.307333
Target:  5'- aGGCGCUgGCCGCGaagugggguguGUACgugaaugaccagacgGCGGCg -3'
miRNA:   3'- cCUGCGAgCGGCGCgu---------CGUGa--------------CGCCG- -5'
28025 3' -61 NC_005887.1 + 6054 0.7 0.180079
Target:  5'- uGGugGCa-GCgGCGCGGCACUcaccaacgaagauGCGcGCg -3'
miRNA:   3'- -CCugCGagCGgCGCGUCGUGA-------------CGC-CG- -5'
28025 3' -61 NC_005887.1 + 6419 0.68 0.265779
Target:  5'- aGGCGCUgGCCGaucugaacgGCAaCACcGCGGCa -3'
miRNA:   3'- cCUGCGAgCGGCg--------CGUcGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 6476 0.7 0.211304
Target:  5'- cGGGCGCggCGUCGCGguGU-CUGcCGaGCg -3'
miRNA:   3'- -CCUGCGa-GCGGCGCguCGuGAC-GC-CG- -5'
28025 3' -61 NC_005887.1 + 6793 0.69 0.216847
Target:  5'- cGGCGCUCGCCGCacaugucgaGCAG-ACcauCGGCg -3'
miRNA:   3'- cCUGCGAGCGGCG---------CGUCgUGac-GCCG- -5'
28025 3' -61 NC_005887.1 + 6823 0.68 0.259204
Target:  5'- uGGCGCUaCGUgGCGCGGguCUGCa-- -3'
miRNA:   3'- cCUGCGA-GCGgCGCGUCguGACGccg -5'
28025 3' -61 NC_005887.1 + 7018 0.74 0.096559
Target:  5'- cGugGC-CgGCCGcCGCGGCGC-GCGGCa -3'
miRNA:   3'- cCugCGaG-CGGC-GCGUCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 7102 0.72 0.134003
Target:  5'- cGGAauCGCgCGUgGUcuaacgaggcgggGCGGCGCUGCGGCg -3'
miRNA:   3'- -CCU--GCGaGCGgCG-------------CGUCGUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 7204 0.7 0.180556
Target:  5'- cGAauuCUCGCgUGCGCAgGCGCUGuCGGCg -3'
miRNA:   3'- cCUgc-GAGCG-GCGCGU-CGUGAC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.