miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 385 0.71 0.153839
Target:  5'- aGGCGagcgCGCCGCGCAcGCACcacGCGaGCa -3'
miRNA:   3'- cCUGCga--GCGGCGCGU-CGUGa--CGC-CG- -5'
28025 3' -61 NC_005887.1 + 421 0.72 0.134368
Target:  5'- cGGGCaGCUCagcugcgaGCCGCuCAGCACgUGCGGg -3'
miRNA:   3'- -CCUG-CGAG--------CGGCGcGUCGUG-ACGCCg -5'
28025 3' -61 NC_005887.1 + 712 0.66 0.355329
Target:  5'- -aGCGUgCGCCGCGCAGaCGCaGCagauccucacgGGCc -3'
miRNA:   3'- ccUGCGaGCGGCGCGUC-GUGaCG-----------CCG- -5'
28025 3' -61 NC_005887.1 + 869 0.68 0.252763
Target:  5'- uGGACGCguggcccgCGCCGCcggacgagucagGCGGC-CU-CGGCu -3'
miRNA:   3'- -CCUGCGa-------GCGGCG------------CGUCGuGAcGCCG- -5'
28025 3' -61 NC_005887.1 + 1004 0.67 0.323277
Target:  5'- ---gGC-CGCCGUGCGcGCGCUGUacaccGGCu -3'
miRNA:   3'- ccugCGaGCGGCGCGU-CGUGACG-----CCG- -5'
28025 3' -61 NC_005887.1 + 1230 0.71 0.166718
Target:  5'- uGGCGggCGCUGCGCGGCGCU-CaGCa -3'
miRNA:   3'- cCUGCgaGCGGCGCGUCGUGAcGcCG- -5'
28025 3' -61 NC_005887.1 + 1478 0.76 0.067044
Target:  5'- cGACGCcgaCGgCGUGCGGCGCUcgcGCGGCg -3'
miRNA:   3'- cCUGCGa--GCgGCGCGUCGUGA---CGCCG- -5'
28025 3' -61 NC_005887.1 + 1555 0.68 0.250856
Target:  5'- cGGCGCgUCGCCGCcacgaaccucgaccGCcggcucggcGGCGC-GCGGCg -3'
miRNA:   3'- cCUGCG-AGCGGCG--------------CG---------UCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 1673 0.67 0.300686
Target:  5'- -uGCGCgcgCGCCagGUGCAGgAUggUGCGGCc -3'
miRNA:   3'- ccUGCGa--GCGG--CGCGUCgUG--ACGCCG- -5'
28025 3' -61 NC_005887.1 + 1702 0.68 0.279333
Target:  5'- -aGCGCaaGCUGCGCGGCA-UGCaGCu -3'
miRNA:   3'- ccUGCGagCGGCGCGUCGUgACGcCG- -5'
28025 3' -61 NC_005887.1 + 2184 0.67 0.293431
Target:  5'- uGACGC-CgGCCGCggugaucggGCAGCGCaaaccgauggGCGGCu -3'
miRNA:   3'- cCUGCGaG-CGGCG---------CGUCGUGa---------CGCCG- -5'
28025 3' -61 NC_005887.1 + 2185 0.69 0.234227
Target:  5'- --gUGC-CGUCGCGCAGCucacacGCGGCg -3'
miRNA:   3'- ccuGCGaGCGGCGCGUCGuga---CGCCG- -5'
28025 3' -61 NC_005887.1 + 2212 0.66 0.371319
Target:  5'- -aGCGCggcgCGCagCGCGCAccGCACgcuguaggcguccUGCGGCu -3'
miRNA:   3'- ccUGCGa---GCG--GCGCGU--CGUG-------------ACGCCG- -5'
28025 3' -61 NC_005887.1 + 2523 0.73 0.117189
Target:  5'- cGGACuGCcgcaCGCUGCGCaaGGCGCUGUcgGGCg -3'
miRNA:   3'- -CCUG-CGa---GCGGCGCG--UCGUGACG--CCG- -5'
28025 3' -61 NC_005887.1 + 2800 0.68 0.252763
Target:  5'- cGGGCaGCcCGUCGCGCGG-AUUGgGGUa -3'
miRNA:   3'- -CCUG-CGaGCGGCGCGUCgUGACgCCG- -5'
28025 3' -61 NC_005887.1 + 2921 0.75 0.081656
Target:  5'- cGACGC-CGCCgccaagcuGCGCaAGCGCcGCGGCa -3'
miRNA:   3'- cCUGCGaGCGG--------CGCG-UCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 3397 0.72 0.138072
Target:  5'- --cUGUUCGCCGCGCgcuaccgcuGGCAggGCGGCu -3'
miRNA:   3'- ccuGCGAGCGGCGCG---------UCGUgaCGCCG- -5'
28025 3' -61 NC_005887.1 + 3599 0.77 0.056554
Target:  5'- gGGA-GCUCacguugcgccagGCCGCGCAGCGCUuCGGCc -3'
miRNA:   3'- -CCUgCGAG------------CGGCGCGUCGUGAcGCCG- -5'
28025 3' -61 NC_005887.1 + 3843 0.66 0.339028
Target:  5'- cGGGCGCUucuaCGUCG-GCAccgacgauguGUACgGCGGCa -3'
miRNA:   3'- -CCUGCGA----GCGGCgCGU----------CGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 4093 0.66 0.380798
Target:  5'- aGGCGCagaucggcaUCGaguuCGCGCAGgACacGCGGCa -3'
miRNA:   3'- cCUGCG---------AGCg---GCGCGUCgUGa-CGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.