Results 1 - 20 of 211 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28025 | 3' | -61 | NC_005887.1 | + | 385 | 0.71 | 0.153839 |
Target: 5'- aGGCGagcgCGCCGCGCAcGCACcacGCGaGCa -3' miRNA: 3'- cCUGCga--GCGGCGCGU-CGUGa--CGC-CG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 421 | 0.72 | 0.134368 |
Target: 5'- cGGGCaGCUCagcugcgaGCCGCuCAGCACgUGCGGg -3' miRNA: 3'- -CCUG-CGAG--------CGGCGcGUCGUG-ACGCCg -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 712 | 0.66 | 0.355329 |
Target: 5'- -aGCGUgCGCCGCGCAGaCGCaGCagauccucacgGGCc -3' miRNA: 3'- ccUGCGaGCGGCGCGUC-GUGaCG-----------CCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 869 | 0.68 | 0.252763 |
Target: 5'- uGGACGCguggcccgCGCCGCcggacgagucagGCGGC-CU-CGGCu -3' miRNA: 3'- -CCUGCGa-------GCGGCG------------CGUCGuGAcGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 1004 | 0.67 | 0.323277 |
Target: 5'- ---gGC-CGCCGUGCGcGCGCUGUacaccGGCu -3' miRNA: 3'- ccugCGaGCGGCGCGU-CGUGACG-----CCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 1230 | 0.71 | 0.166718 |
Target: 5'- uGGCGggCGCUGCGCGGCGCU-CaGCa -3' miRNA: 3'- cCUGCgaGCGGCGCGUCGUGAcGcCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 1478 | 0.76 | 0.067044 |
Target: 5'- cGACGCcgaCGgCGUGCGGCGCUcgcGCGGCg -3' miRNA: 3'- cCUGCGa--GCgGCGCGUCGUGA---CGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 1555 | 0.68 | 0.250856 |
Target: 5'- cGGCGCgUCGCCGCcacgaaccucgaccGCcggcucggcGGCGC-GCGGCg -3' miRNA: 3'- cCUGCG-AGCGGCG--------------CG---------UCGUGaCGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 1673 | 0.67 | 0.300686 |
Target: 5'- -uGCGCgcgCGCCagGUGCAGgAUggUGCGGCc -3' miRNA: 3'- ccUGCGa--GCGG--CGCGUCgUG--ACGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 1702 | 0.68 | 0.279333 |
Target: 5'- -aGCGCaaGCUGCGCGGCA-UGCaGCu -3' miRNA: 3'- ccUGCGagCGGCGCGUCGUgACGcCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 2184 | 0.67 | 0.293431 |
Target: 5'- uGACGC-CgGCCGCggugaucggGCAGCGCaaaccgauggGCGGCu -3' miRNA: 3'- cCUGCGaG-CGGCG---------CGUCGUGa---------CGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 2185 | 0.69 | 0.234227 |
Target: 5'- --gUGC-CGUCGCGCAGCucacacGCGGCg -3' miRNA: 3'- ccuGCGaGCGGCGCGUCGuga---CGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 2212 | 0.66 | 0.371319 |
Target: 5'- -aGCGCggcgCGCagCGCGCAccGCACgcuguaggcguccUGCGGCu -3' miRNA: 3'- ccUGCGa---GCG--GCGCGU--CGUG-------------ACGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 2523 | 0.73 | 0.117189 |
Target: 5'- cGGACuGCcgcaCGCUGCGCaaGGCGCUGUcgGGCg -3' miRNA: 3'- -CCUG-CGa---GCGGCGCG--UCGUGACG--CCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 2800 | 0.68 | 0.252763 |
Target: 5'- cGGGCaGCcCGUCGCGCGG-AUUGgGGUa -3' miRNA: 3'- -CCUG-CGaGCGGCGCGUCgUGACgCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 2921 | 0.75 | 0.081656 |
Target: 5'- cGACGC-CGCCgccaagcuGCGCaAGCGCcGCGGCa -3' miRNA: 3'- cCUGCGaGCGG--------CGCG-UCGUGaCGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 3397 | 0.72 | 0.138072 |
Target: 5'- --cUGUUCGCCGCGCgcuaccgcuGGCAggGCGGCu -3' miRNA: 3'- ccuGCGAGCGGCGCG---------UCGUgaCGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 3599 | 0.77 | 0.056554 |
Target: 5'- gGGA-GCUCacguugcgccagGCCGCGCAGCGCUuCGGCc -3' miRNA: 3'- -CCUgCGAG------------CGGCGCGUCGUGAcGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 3843 | 0.66 | 0.339028 |
Target: 5'- cGGGCGCUucuaCGUCG-GCAccgacgauguGUACgGCGGCa -3' miRNA: 3'- -CCUGCGA----GCGGCgCGU----------CGUGaCGCCG- -5' |
|||||||
28025 | 3' | -61 | NC_005887.1 | + | 4093 | 0.66 | 0.380798 |
Target: 5'- aGGCGCagaucggcaUCGaguuCGCGCAGgACacGCGGCa -3' miRNA: 3'- cCUGCG---------AGCg---GCGCGUCgUGa-CGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home