miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 42192 0.66 0.34711
Target:  5'- -cGCGCUgGCuCGuCGCAuuGCUGCGcGCg -3'
miRNA:   3'- ccUGCGAgCG-GC-GCGUcgUGACGC-CG- -5'
28025 3' -61 NC_005887.1 + 42056 0.66 0.34711
Target:  5'- uGGACcuGCUCGCCGacuggaucgaCG-AGCGCUGUcGCg -3'
miRNA:   3'- -CCUG--CGAGCGGC----------GCgUCGUGACGcCG- -5'
28025 3' -61 NC_005887.1 + 4093 0.66 0.380798
Target:  5'- aGGCGCagaucggcaUCGaguuCGCGCAGgACacGCGGCa -3'
miRNA:   3'- cCUGCG---------AGCg---GCGCGUCgUGa-CGCCG- -5'
28025 3' -61 NC_005887.1 + 22224 0.66 0.354501
Target:  5'- cGGugGCccgcugaUCGUCGCGUGGUucacgaucagcgACgGUGGCg -3'
miRNA:   3'- -CCugCG-------AGCGGCGCGUCG------------UGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 25496 0.66 0.363684
Target:  5'- cGGCgGCUCGgacgaUgGCGCGGCGggugGCGGCa -3'
miRNA:   3'- cCUG-CGAGC-----GgCGCGUCGUga--CGCCG- -5'
28025 3' -61 NC_005887.1 + 14853 0.66 0.363684
Target:  5'- cGGGCGUgcacacCGCagcaacaGCGC-GCACcgcGCGGCa -3'
miRNA:   3'- -CCUGCGa-----GCGg------CGCGuCGUGa--CGCCG- -5'
28025 3' -61 NC_005887.1 + 30760 0.66 0.339028
Target:  5'- cGGucaGCUCGaccgugCGCGCGGCGaguuccuuCUGCGcGCg -3'
miRNA:   3'- -CCug-CGAGCg-----GCGCGUCGU--------GACGC-CG- -5'
28025 3' -61 NC_005887.1 + 3843 0.66 0.339028
Target:  5'- cGGGCGCUucuaCGUCG-GCAccgacgauguGUACgGCGGCa -3'
miRNA:   3'- -CCUGCGA----GCGGCgCGU----------CGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 21266 0.66 0.355329
Target:  5'- gGGGCaccGCggcgGCgGCGUAuGCGCUGCuGGCg -3'
miRNA:   3'- -CCUG---CGag--CGgCGCGU-CGUGACG-CCG- -5'
28025 3' -61 NC_005887.1 + 24945 0.66 0.339028
Target:  5'- cGACGCgugCGCgCGgGCcgccuuGCGC-GCGGCc -3'
miRNA:   3'- cCUGCGa--GCG-GCgCGu-----CGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 4664 0.66 0.380798
Target:  5'- cGACGCgcagacCGCUGCGCAGa----CGGCg -3'
miRNA:   3'- cCUGCGa-----GCGGCGCGUCgugacGCCG- -5'
28025 3' -61 NC_005887.1 + 35818 0.66 0.363684
Target:  5'- -cGCGCUguguuccucgugCGCCGCGuCGGCGuagaucaucgcCUGCGGa -3'
miRNA:   3'- ccUGCGA------------GCGGCGC-GUCGU-----------GACGCCg -5'
28025 3' -61 NC_005887.1 + 13996 0.66 0.375608
Target:  5'- cGACGaagaaugCGCCGCGCgccuccgcaaccgccGGCGCgccGcCGGCg -3'
miRNA:   3'- cCUGCga-----GCGGCGCG---------------UCGUGa--C-GCCG- -5'
28025 3' -61 NC_005887.1 + 4591 0.66 0.34711
Target:  5'- aGGCGCagGCCGCGCAGa--UGCa-- -3'
miRNA:   3'- cCUGCGagCGGCGCGUCgugACGccg -5'
28025 3' -61 NC_005887.1 + 41023 0.66 0.372174
Target:  5'- aGGCGUcuacuggCGCCGCGCGGUGCagGuCGaGCu -3'
miRNA:   3'- cCUGCGa------GCGGCGCGUCGUGa-C-GC-CG- -5'
28025 3' -61 NC_005887.1 + 15681 0.66 0.372174
Target:  5'- cGACcaGCUcacCGCCGCGCGGCcggaugauuccGCcGcCGGCg -3'
miRNA:   3'- cCUG--CGA---GCGGCGCGUCG-----------UGaC-GCCG- -5'
28025 3' -61 NC_005887.1 + 28562 0.66 0.380798
Target:  5'- cGAUGUUCGCgGCGguGaC-CUGCuucacGGCg -3'
miRNA:   3'- cCUGCGAGCGgCGCguC-GuGACG-----CCG- -5'
28025 3' -61 NC_005887.1 + 29731 0.66 0.363684
Target:  5'- aGGAUcacgCGCCGCGCGuGCACggucuugccCGGCg -3'
miRNA:   3'- -CCUGcga-GCGGCGCGU-CGUGac-------GCCG- -5'
28025 3' -61 NC_005887.1 + 41272 0.66 0.363684
Target:  5'- uGGCGCcgUCGaCCuGCGCAcgggcGCGCUGCuGCc -3'
miRNA:   3'- cCUGCG--AGC-GG-CGCGU-----CGUGACGcCG- -5'
28025 3' -61 NC_005887.1 + 28738 0.66 0.372174
Target:  5'- -cGCGCuaUCGCCGUuguaggugagacGCGGCAUUaCGGCc -3'
miRNA:   3'- ccUGCG--AGCGGCG------------CGUCGUGAcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.