miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 41976 0.79 0.045014
Target:  5'- cGGcGCGCUCGCCuaucaGCAGCACggccUGCGGCc -3'
miRNA:   3'- -CC-UGCGAGCGGcg---CGUCGUG----ACGCCG- -5'
28025 3' -61 NC_005887.1 + 27231 0.73 0.114008
Target:  5'- cGGGCGCaUCGCgGCGCAacuGCAUcGCGcGCc -3'
miRNA:   3'- -CCUGCG-AGCGgCGCGU---CGUGaCGC-CG- -5'
28025 3' -61 NC_005887.1 + 40157 0.74 0.107887
Target:  5'- -cGCGCUCGCCGCGUgugagcuGCGC-GaCGGCa -3'
miRNA:   3'- ccUGCGAGCGGCGCGu------CGUGaC-GCCG- -5'
28025 3' -61 NC_005887.1 + 4246 0.74 0.104943
Target:  5'- cGACGCUCgGCCGCacGCAGUcugaACUGCucGGCc -3'
miRNA:   3'- cCUGCGAG-CGGCG--CGUCG----UGACG--CCG- -5'
28025 3' -61 NC_005887.1 + 8559 0.74 0.102075
Target:  5'- aGGGCGCaUGCCGaagGCAGCACcGCaGCa -3'
miRNA:   3'- -CCUGCGaGCGGCg--CGUCGUGaCGcCG- -5'
28025 3' -61 NC_005887.1 + 10026 0.74 0.093908
Target:  5'- -cGCGCg-GCCGCGCuGGCACgaacaGCGGCa -3'
miRNA:   3'- ccUGCGagCGGCGCG-UCGUGa----CGCCG- -5'
28025 3' -61 NC_005887.1 + 11715 0.75 0.091326
Target:  5'- aGAuCGCuUCGCCGCGC-GCACgGCGcGCa -3'
miRNA:   3'- cCU-GCG-AGCGGCGCGuCGUGaCGC-CG- -5'
28025 3' -61 NC_005887.1 + 2921 0.75 0.081656
Target:  5'- cGACGC-CGCCgccaagcuGCGCaAGCGCcGCGGCa -3'
miRNA:   3'- cCUGCGaGCGG--------CGCG-UCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 16468 0.76 0.075054
Target:  5'- -uGCGCUCGaCCGCGCGGCaggauccggcggGCUGguCGGCg -3'
miRNA:   3'- ccUGCGAGC-GGCGCGUCG------------UGAC--GCCG- -5'
28025 3' -61 NC_005887.1 + 19334 0.76 0.073797
Target:  5'- aGGCGCUCGauaagcugaccaugcUCGCGCAGCagacGCgUGCGGCg -3'
miRNA:   3'- cCUGCGAGC---------------GGCGCGUCG----UG-ACGCCG- -5'
28025 3' -61 NC_005887.1 + 34276 0.76 0.07297
Target:  5'- cGGcuuGCGCaugccgUCGCCGUGCGGCugACUGCGGg -3'
miRNA:   3'- -CC---UGCG------AGCGGCGCGUCG--UGACGCCg -5'
28025 3' -61 NC_005887.1 + 35205 0.76 0.07297
Target:  5'- gGGGCGaUUCGuuGCGCAGCAgcUUGuCGGCc -3'
miRNA:   3'- -CCUGC-GAGCggCGCGUCGU--GAC-GCCG- -5'
28025 3' -61 NC_005887.1 + 15602 0.76 0.07297
Target:  5'- aGACGCagcgcacgggCGUCGCGCAGCAg-GCGGCc -3'
miRNA:   3'- cCUGCGa---------GCGGCGCGUCGUgaCGCCG- -5'
28025 3' -61 NC_005887.1 + 4615 0.76 0.07094
Target:  5'- aGAUGCUCGCCGCG--GCGCcgGUGGCc -3'
miRNA:   3'- cCUGCGAGCGGCGCguCGUGa-CGCCG- -5'
28025 3' -61 NC_005887.1 + 1478 0.76 0.067044
Target:  5'- cGACGCcgaCGgCGUGCGGCGCUcgcGCGGCg -3'
miRNA:   3'- cCUGCGa--GCgGCGCGUCGUGA---CGCCG- -5'
28025 3' -61 NC_005887.1 + 10985 0.77 0.063175
Target:  5'- uGGACGCUCGUCgaggaugGCGUGGUGCucgggUGCGGCg -3'
miRNA:   3'- -CCUGCGAGCGG-------CGCGUCGUG-----ACGCCG- -5'
28025 3' -61 NC_005887.1 + 13088 0.77 0.061583
Target:  5'- cGGCGCUCGaUCGCGgAGUGCUGCagGGCg -3'
miRNA:   3'- cCUGCGAGC-GGCGCgUCGUGACG--CCG- -5'
28025 3' -61 NC_005887.1 + 3599 0.77 0.056554
Target:  5'- gGGA-GCUCacguugcgccagGCCGCGCAGCGCUuCGGCc -3'
miRNA:   3'- -CCUgCGAG------------CGGCGCGUCGUGAcGCCG- -5'
28025 3' -61 NC_005887.1 + 27705 0.78 0.050464
Target:  5'- -uAC-CUCGCCGCGUAGCACUcGaCGGCg -3'
miRNA:   3'- ccUGcGAGCGGCGCGUCGUGA-C-GCCG- -5'
28025 3' -61 NC_005887.1 + 11549 0.81 0.02925
Target:  5'- ---aGCUCGgCGCGCAGCGC-GCGGCg -3'
miRNA:   3'- ccugCGAGCgGCGCGUCGUGaCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.