miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 28562 0.66 0.380798
Target:  5'- cGAUGUUCGCgGCGguGaC-CUGCuucacGGCg -3'
miRNA:   3'- cCUGCGAGCGgCGCguC-GuGACG-----CCG- -5'
28025 3' -61 NC_005887.1 + 26738 0.66 0.339028
Target:  5'- cGGcCGCcUGCUGCGCGacgcccguGCGCUGCgucucagcuucGGCg -3'
miRNA:   3'- -CCuGCGaGCGGCGCGU--------CGUGACG-----------CCG- -5'
28025 3' -61 NC_005887.1 + 12155 0.67 0.331084
Target:  5'- cGugGCUgGCCgGCGagaAGUggaaGCUGCaGGCg -3'
miRNA:   3'- cCugCGAgCGG-CGCg--UCG----UGACG-CCG- -5'
28025 3' -61 NC_005887.1 + 27086 1.13 0.000107
Target:  5'- cGGACGCUCGCCGCGCAGCACUGCGGCu -3'
miRNA:   3'- -CCUGCGAGCGGCGCGUCGUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 19046 0.66 0.372174
Target:  5'- uGGGcCGCagUGCgGCGUuguucuucGGCgcggGCUGCGGCa -3'
miRNA:   3'- -CCU-GCGa-GCGgCGCG--------UCG----UGACGCCG- -5'
28025 3' -61 NC_005887.1 + 2212 0.66 0.371319
Target:  5'- -aGCGCggcgCGCagCGCGCAccGCACgcuguaggcguccUGCGGCu -3'
miRNA:   3'- ccUGCGa---GCG--GCGCGU--CGUG-------------ACGCCG- -5'
28025 3' -61 NC_005887.1 + 18937 0.66 0.363684
Target:  5'- cGACGagcugaUCGaCGCGCu--GCUGCGGCu -3'
miRNA:   3'- cCUGCg-----AGCgGCGCGucgUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 29970 0.66 0.363684
Target:  5'- uGACGUUguUUGCGCGGUGCUGCucGGCc -3'
miRNA:   3'- cCUGCGAgcGGCGCGUCGUGACG--CCG- -5'
28025 3' -61 NC_005887.1 + 712 0.66 0.355329
Target:  5'- -aGCGUgCGCCGCGCAGaCGCaGCagauccucacgGGCc -3'
miRNA:   3'- ccUGCGaGCGGCGCGUC-GUGaCG-----------CCG- -5'
28025 3' -61 NC_005887.1 + 4117 0.66 0.343861
Target:  5'- -aGCGCUCGaccaucccggccaCGCGCAagGCUGCGcGCg -3'
miRNA:   3'- ccUGCGAGCg------------GCGCGUcgUGACGC-CG- -5'
28025 3' -61 NC_005887.1 + 42019 0.66 0.350381
Target:  5'- cGACgGCUCGCgCacuuccucgguguacGCGC-GCACcGCGGCc -3'
miRNA:   3'- cCUG-CGAGCG-G---------------CGCGuCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 20913 0.66 0.355329
Target:  5'- cGACGCugagagcgucgUCGCCGaaacaGCGGCAggUGUGGUg -3'
miRNA:   3'- cCUGCG-----------AGCGGCg----CGUCGUg-ACGCCG- -5'
28025 3' -61 NC_005887.1 + 24682 0.66 0.380798
Target:  5'- cGACG-UCGCCaaGCGCGGCGaggaucgugccCUGCaGCu -3'
miRNA:   3'- cCUGCgAGCGG--CGCGUCGU-----------GACGcCG- -5'
28025 3' -61 NC_005887.1 + 25141 0.66 0.34711
Target:  5'- -cACGCccUGCuUGCGCGGCGCaacauugccgcgUGCGGCc -3'
miRNA:   3'- ccUGCGa-GCG-GCGCGUCGUG------------ACGCCG- -5'
28025 3' -61 NC_005887.1 + 29379 0.66 0.375608
Target:  5'- cGGGuCGCcgcuucggucugguaUUGCUGUagcgucGCGGCuuGCUGCGGCa -3'
miRNA:   3'- -CCU-GCG---------------AGCGGCG------CGUCG--UGACGCCG- -5'
28025 3' -61 NC_005887.1 + 23925 0.66 0.362842
Target:  5'- -cGCGCcgaucagCGUCGUGCugacgacGGCGCcGCGGCg -3'
miRNA:   3'- ccUGCGa------GCGGCGCG-------UCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 25019 0.66 0.346296
Target:  5'- -uGCGCgucagcaUCGCggaaGUGCAGCAC-GCGGUg -3'
miRNA:   3'- ccUGCG-------AGCGg---CGCGUCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 20774 0.66 0.339028
Target:  5'- cGACGa-UGCCG-GCAGUACUGgaUGGCg -3'
miRNA:   3'- cCUGCgaGCGGCgCGUCGUGAC--GCCG- -5'
28025 3' -61 NC_005887.1 + 14583 0.66 0.372174
Target:  5'- uGGCGCucuaccUCGCCG-GC-GCGCU-CGGCa -3'
miRNA:   3'- cCUGCG------AGCGGCgCGuCGUGAcGCCG- -5'
28025 3' -61 NC_005887.1 + 37206 0.66 0.363684
Target:  5'- cGGCGCgccgaCGUCGgGCAGCGCgGUcaugccgagcuuGGCg -3'
miRNA:   3'- cCUGCGa----GCGGCgCGUCGUGaCG------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.