miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 26889 0.67 0.323277
Target:  5'- -cGCGuCUUGgUGCGCGGuCAUcGCGGCg -3'
miRNA:   3'- ccUGC-GAGCgGCGCGUC-GUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 12155 0.67 0.331084
Target:  5'- cGugGCUgGCCgGCGagaAGUggaaGCUGCaGGCg -3'
miRNA:   3'- cCugCGAgCGG-CGCg--UCG----UGACG-CCG- -5'
28025 3' -61 NC_005887.1 + 20913 0.66 0.355329
Target:  5'- cGACGCugagagcgucgUCGCCGaaacaGCGGCAggUGUGGUg -3'
miRNA:   3'- cCUGCG-----------AGCGGCg----CGUCGUg-ACGCCG- -5'
28025 3' -61 NC_005887.1 + 14583 0.66 0.372174
Target:  5'- uGGCGCucuaccUCGCCG-GC-GCGCU-CGGCa -3'
miRNA:   3'- cCUGCG------AGCGGCgCGuCGUGAcGCCG- -5'
28025 3' -61 NC_005887.1 + 23423 0.68 0.279333
Target:  5'- cGACgGC-CGCUGCGagauucggugAGCGCUGCGGg -3'
miRNA:   3'- cCUG-CGaGCGGCGCg---------UCGUGACGCCg -5'
28025 3' -61 NC_005887.1 + 5010 0.67 0.300686
Target:  5'- aGGAUGCggcgaccgaUGCCaGUGcCGGCGCUGCuGCg -3'
miRNA:   3'- -CCUGCGa--------GCGG-CGC-GUCGUGACGcCG- -5'
28025 3' -61 NC_005887.1 + 26738 0.66 0.339028
Target:  5'- cGGcCGCcUGCUGCGCGacgcccguGCGCUGCgucucagcuucGGCg -3'
miRNA:   3'- -CCuGCGaGCGGCGCGU--------CGUGACG-----------CCG- -5'
28025 3' -61 NC_005887.1 + 29379 0.66 0.375608
Target:  5'- cGGGuCGCcgcuucggucugguaUUGCUGUagcgucGCGGCuuGCUGCGGCa -3'
miRNA:   3'- -CCU-GCG---------------AGCGGCG------CGUCG--UGACGCCG- -5'
28025 3' -61 NC_005887.1 + 5600 0.67 0.300686
Target:  5'- uGGAa-CcUGCCGCGCGGCAU--CGGCa -3'
miRNA:   3'- -CCUgcGaGCGGCGCGUCGUGacGCCG- -5'
28025 3' -61 NC_005887.1 + 24682 0.66 0.380798
Target:  5'- cGACG-UCGCCaaGCGCGGCGaggaucgugccCUGCaGCu -3'
miRNA:   3'- cCUGCgAGCGG--CGCGUCGU-----------GACGcCG- -5'
28025 3' -61 NC_005887.1 + 20774 0.66 0.339028
Target:  5'- cGACGa-UGCCG-GCAGUACUGgaUGGCg -3'
miRNA:   3'- cCUGCgaGCGGCgCGUCGUGAC--GCCG- -5'
28025 3' -61 NC_005887.1 + 8394 0.67 0.308078
Target:  5'- cGGACGC-CGCaCGCGaCgugcucgccgAGCGCcGuCGGCa -3'
miRNA:   3'- -CCUGCGaGCG-GCGC-G----------UCGUGaC-GCCG- -5'
28025 3' -61 NC_005887.1 + 25141 0.66 0.34711
Target:  5'- -cACGCccUGCuUGCGCGGCGCaacauugccgcgUGCGGCc -3'
miRNA:   3'- ccUGCGa-GCG-GCGCGUCGUG------------ACGCCG- -5'
28025 3' -61 NC_005887.1 + 712 0.66 0.355329
Target:  5'- -aGCGUgCGCCGCGCAGaCGCaGCagauccucacgGGCc -3'
miRNA:   3'- ccUGCGaGCGGCGCGUC-GUGaCG-----------CCG- -5'
28025 3' -61 NC_005887.1 + 18937 0.66 0.363684
Target:  5'- cGACGagcugaUCGaCGCGCu--GCUGCGGCu -3'
miRNA:   3'- cCUGCg-----AGCgGCGCGucgUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 19046 0.66 0.372174
Target:  5'- uGGGcCGCagUGCgGCGUuguucuucGGCgcggGCUGCGGCa -3'
miRNA:   3'- -CCU-GCGa-GCGgCGCG--------UCG----UGACGCCG- -5'
28025 3' -61 NC_005887.1 + 17276 0.68 0.255324
Target:  5'- cGGCGgcCUCaccuucacccuuucgGCCa-GCGGCACUGCGGCa -3'
miRNA:   3'- cCUGC--GAG---------------CGGcgCGUCGUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 37597 0.68 0.268447
Target:  5'- -cGCGCUCGUCGCaaaAGCACcgccgguauugcucGCGGCg -3'
miRNA:   3'- ccUGCGAGCGGCGcg-UCGUGa-------------CGCCG- -5'
28025 3' -61 NC_005887.1 + 18768 0.67 0.293431
Target:  5'- -aGCGCgucguaGUCGCGUucGCACUGcCGGCc -3'
miRNA:   3'- ccUGCGag----CGGCGCGu-CGUGAC-GCCG- -5'
28025 3' -61 NC_005887.1 + 18224 0.67 0.300686
Target:  5'- cGGCGCUucacaccgcaCGacaCGCGCAGCACgGCcaagGGCc -3'
miRNA:   3'- cCUGCGA----------GCg--GCGCGUCGUGaCG----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.