Results 1 - 20 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28025 | 3' | -61 | NC_005887.1 | + | 27086 | 1.13 | 0.000107 |
Target: 5'- cGGACGCUCGCCGCGCAGCACUGCGGCu -3' miRNA: 3'- -CCUGCGAGCGGCGCGUCGUGACGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 11549 | 0.81 | 0.02925 |
Target: 5'- ---aGCUCGgCGCGCAGCGC-GCGGCg -3' miRNA: 3'- ccugCGAGCgGCGCGUCGUGaCGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 36922 | 0.81 | 0.028419 |
Target: 5'- cGGGCGCgUgGUCGCGcCGGuCGCUGCGGCg -3' miRNA: 3'- -CCUGCG-AgCGGCGC-GUC-GUGACGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 41976 | 0.79 | 0.045014 |
Target: 5'- cGGcGCGCUCGCCuaucaGCAGCACggccUGCGGCc -3' miRNA: 3'- -CC-UGCGAGCGGcg---CGUCGUG----ACGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 14997 | 0.78 | 0.054968 |
Target: 5'- cGACGCUCGuCUGCGCGcCGCUGCGcGUg -3' miRNA: 3'- cCUGCGAGC-GGCGCGUcGUGACGC-CG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 27705 | 0.78 | 0.050464 |
Target: 5'- -uAC-CUCGCCGCGUAGCACUcGaCGGCg -3' miRNA: 3'- ccUGcGAGCGGCGCGUCGUGA-C-GCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 41714 | 0.78 | 0.050464 |
Target: 5'- -uGCGCUCGCCGCGCGcuuuCAUcGCGGCu -3' miRNA: 3'- ccUGCGAGCGGCGCGUc---GUGaCGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 3599 | 0.77 | 0.056554 |
Target: 5'- gGGA-GCUCacguugcgccagGCCGCGCAGCGCUuCGGCc -3' miRNA: 3'- -CCUgCGAG------------CGGCGCGUCGUGAcGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 27473 | 0.77 | 0.061583 |
Target: 5'- uGGCGCauUCuGCCGCGCGGUgcgcgcuguuGCUGCGGUg -3' miRNA: 3'- cCUGCG--AG-CGGCGCGUCG----------UGACGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 10985 | 0.77 | 0.063175 |
Target: 5'- uGGACGCUCGUCgaggaugGCGUGGUGCucgggUGCGGCg -3' miRNA: 3'- -CCUGCGAGCGG-------CGCGUCGUG-----ACGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 13088 | 0.77 | 0.061583 |
Target: 5'- cGGCGCUCGaUCGCGgAGUGCUGCagGGCg -3' miRNA: 3'- cCUGCGAGC-GGCGCgUCGUGACG--CCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 39097 | 0.76 | 0.075054 |
Target: 5'- cGACGaa-GuuGCGCAGCGCgaGCGGCg -3' miRNA: 3'- cCUGCgagCggCGCGUCGUGa-CGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 26506 | 0.76 | 0.075054 |
Target: 5'- cGGGCGUUucccucgaucgCGCCGCGCaAGCGCUGCaccuGCg -3' miRNA: 3'- -CCUGCGA-----------GCGGCGCG-UCGUGACGc---CG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 16468 | 0.76 | 0.075054 |
Target: 5'- -uGCGCUCGaCCGCGCGGCaggauccggcggGCUGguCGGCg -3' miRNA: 3'- ccUGCGAGC-GGCGCGUCG------------UGAC--GCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 19334 | 0.76 | 0.073797 |
Target: 5'- aGGCGCUCGauaagcugaccaugcUCGCGCAGCagacGCgUGCGGCg -3' miRNA: 3'- cCUGCGAGC---------------GGCGCGUCG----UG-ACGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 34276 | 0.76 | 0.07297 |
Target: 5'- cGGcuuGCGCaugccgUCGCCGUGCGGCugACUGCGGg -3' miRNA: 3'- -CC---UGCG------AGCGGCGCGUCG--UGACGCCg -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 35205 | 0.76 | 0.07297 |
Target: 5'- gGGGCGaUUCGuuGCGCAGCAgcUUGuCGGCc -3' miRNA: 3'- -CCUGC-GAGCggCGCGUCGU--GAC-GCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 15602 | 0.76 | 0.07297 |
Target: 5'- aGACGCagcgcacgggCGUCGCGCAGCAg-GCGGCc -3' miRNA: 3'- cCUGCGa---------GCGGCGCGUCGUgaCGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 4615 | 0.76 | 0.07094 |
Target: 5'- aGAUGCUCGCCGCG--GCGCcgGUGGCc -3' miRNA: 3'- cCUGCGAGCGGCGCguCGUGa-CGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 1478 | 0.76 | 0.067044 |
Target: 5'- cGACGCcgaCGgCGUGCGGCGCUcgcGCGGCg -3' miRNA: 3'- cCUGCGa--GCgGCGCGUCGUGA---CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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