miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 7996 0.7 0.210756
Target:  5'- gGGGCGCUCgucuccaGCCGUGgcCGGCGCcaCGGCa -3'
miRNA:   3'- -CCUGCGAG-------CGGCGC--GUCGUGacGCCG- -5'
28025 3' -61 NC_005887.1 + 8106 0.67 0.322504
Target:  5'- ---aGCUCGCCGCGCucgccgaGGCGCcGCuGUu -3'
miRNA:   3'- ccugCGAGCGGCGCG-------UCGUGaCGcCG- -5'
28025 3' -61 NC_005887.1 + 8394 0.67 0.308078
Target:  5'- cGGACGC-CGCaCGCGaCgugcucgccgAGCGCcGuCGGCa -3'
miRNA:   3'- -CCUGCGaGCG-GCGC-G----------UCGUGaC-GCCG- -5'
28025 3' -61 NC_005887.1 + 8559 0.74 0.102075
Target:  5'- aGGGCGCaUGCCGaagGCAGCACcGCaGCa -3'
miRNA:   3'- -CCUGCGaGCGGCg--CGUCGUGaCGcCG- -5'
28025 3' -61 NC_005887.1 + 8702 0.67 0.300686
Target:  5'- cGGCGaucCGCCGCGgcgguaAGCGCUucgucGCGGCc -3'
miRNA:   3'- cCUGCga-GCGGCGCg-----UCGUGA-----CGCCG- -5'
28025 3' -61 NC_005887.1 + 9037 0.67 0.315609
Target:  5'- uGACGUUUGUCG-GCGGCcCguucGCGGCc -3'
miRNA:   3'- cCUGCGAGCGGCgCGUCGuGa---CGCCG- -5'
28025 3' -61 NC_005887.1 + 9601 0.69 0.228307
Target:  5'- uGGCGCgCGCCgGCGC-GCAC-GCGaGCg -3'
miRNA:   3'- cCUGCGaGCGG-CGCGuCGUGaCGC-CG- -5'
28025 3' -61 NC_005887.1 + 9895 0.7 0.211304
Target:  5'- --cCGCaCGCCGCGCAGUgGCUGC-GCa -3'
miRNA:   3'- ccuGCGaGCGGCGCGUCG-UGACGcCG- -5'
28025 3' -61 NC_005887.1 + 10026 0.74 0.093908
Target:  5'- -cGCGCg-GCCGCGCuGGCACgaacaGCGGCa -3'
miRNA:   3'- ccUGCGagCGGCGCG-UCGUGa----CGCCG- -5'
28025 3' -61 NC_005887.1 + 10844 0.69 0.222514
Target:  5'- -uGCGUUCauCCGCGCcGCGCgcGCGGCa -3'
miRNA:   3'- ccUGCGAGc-GGCGCGuCGUGa-CGCCG- -5'
28025 3' -61 NC_005887.1 + 10985 0.77 0.063175
Target:  5'- uGGACGCUCGUCgaggaugGCGUGGUGCucgggUGCGGCg -3'
miRNA:   3'- -CCUGCGAGCGG-------CGCGUCGUG-----ACGCCG- -5'
28025 3' -61 NC_005887.1 + 11089 0.67 0.331084
Target:  5'- cGACGCg-GCCGaCG-AGUACUGgUGGCa -3'
miRNA:   3'- cCUGCGagCGGC-GCgUCGUGAC-GCCG- -5'
28025 3' -61 NC_005887.1 + 11119 0.7 0.205883
Target:  5'- cGGugGCauguucgaucgCGUCGUGCugaAGCAC-GCGGCg -3'
miRNA:   3'- -CCugCGa----------GCGGCGCG---UCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 11374 0.69 0.240276
Target:  5'- -aGCGCgggCGUCaGCGCAGCcggagcGCUgGCGGCc -3'
miRNA:   3'- ccUGCGa--GCGG-CGCGUCG------UGA-CGCCG- -5'
28025 3' -61 NC_005887.1 + 11549 0.81 0.02925
Target:  5'- ---aGCUCGgCGCGCAGCGC-GCGGCg -3'
miRNA:   3'- ccugCGAGCgGCGCGUCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 11583 0.69 0.240276
Target:  5'- aGGAa-CUCGCCGCGC-GCACgGuCGaGCu -3'
miRNA:   3'- -CCUgcGAGCGGCGCGuCGUGaC-GC-CG- -5'
28025 3' -61 NC_005887.1 + 11606 0.7 0.18539
Target:  5'- cGGCGCUCGacaCGCaGguGCAgaGCGuGCg -3'
miRNA:   3'- cCUGCGAGCg--GCG-CguCGUgaCGC-CG- -5'
28025 3' -61 NC_005887.1 + 11715 0.75 0.091326
Target:  5'- aGAuCGCuUCGCCGCGC-GCACgGCGcGCa -3'
miRNA:   3'- cCU-GCG-AGCGGCGCGuCGUGaCGC-CG- -5'
28025 3' -61 NC_005887.1 + 11808 0.7 0.200583
Target:  5'- aGACGCU-GCUGCGUGGCGuCU-CGGCc -3'
miRNA:   3'- cCUGCGAgCGGCGCGUCGU-GAcGCCG- -5'
28025 3' -61 NC_005887.1 + 12155 0.67 0.331084
Target:  5'- cGugGCUgGCCgGCGagaAGUggaaGCUGCaGGCg -3'
miRNA:   3'- cCugCGAgCGG-CGCg--UCG----UGACG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.