miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 24105 0.67 0.331084
Target:  5'- uGugGCccuUgGCCGUGCuGCGCgugucgUGCGGUg -3'
miRNA:   3'- cCugCG---AgCGGCGCGuCGUG------ACGCCG- -5'
28025 3' -61 NC_005887.1 + 2184 0.67 0.293431
Target:  5'- uGACGC-CgGCCGCggugaucggGCAGCGCaaaccgauggGCGGCu -3'
miRNA:   3'- cCUGCGaG-CGGCG---------CGUCGUGa---------CGCCG- -5'
28025 3' -61 NC_005887.1 + 28568 0.67 0.293431
Target:  5'- aGGCG-UCGCCGCccGCuGCGCggacGCGGUc -3'
miRNA:   3'- cCUGCgAGCGGCG--CGuCGUGa---CGCCG- -5'
28025 3' -61 NC_005887.1 + 32417 0.67 0.315609
Target:  5'- cGACGUg-GCCG-GCGGCGaUGUGGCc -3'
miRNA:   3'- cCUGCGagCGGCgCGUCGUgACGCCG- -5'
28025 3' -61 NC_005887.1 + 36062 0.67 0.315609
Target:  5'- cGACGCgcucgcgcaCGCCGUcgauguacaGCuGCACguagGCGGCc -3'
miRNA:   3'- cCUGCGa--------GCGGCG---------CGuCGUGa---CGCCG- -5'
28025 3' -61 NC_005887.1 + 36985 0.67 0.315609
Target:  5'- cGGGucgaGCUCGCCG-GCgAGCACgcGCaGGCc -3'
miRNA:   3'- -CCUg---CGAGCGGCgCG-UCGUGa-CG-CCG- -5'
28025 3' -61 NC_005887.1 + 31386 0.67 0.323277
Target:  5'- -cGCGCUCG--GCGUAGCGgUGCGuGCc -3'
miRNA:   3'- ccUGCGAGCggCGCGUCGUgACGC-CG- -5'
28025 3' -61 NC_005887.1 + 18653 0.67 0.328727
Target:  5'- cGACGCUguuccagcCGCUGCGCGcagucucgucgaacGUGCaggaUGCGGCg -3'
miRNA:   3'- cCUGCGA--------GCGGCGCGU--------------CGUG----ACGCCG- -5'
28025 3' -61 NC_005887.1 + 23208 0.67 0.330297
Target:  5'- gGGGCgGCUacuucaagggccaCGCCGa-CGGCACgcgaGCGGCg -3'
miRNA:   3'- -CCUG-CGA-------------GCGGCgcGUCGUGa---CGCCG- -5'
28025 3' -61 NC_005887.1 + 5772 0.67 0.307333
Target:  5'- aGGCGCUgGCCGCGaagugggguguGUACgugaaugaccagacgGCGGCg -3'
miRNA:   3'- cCUGCGAgCGGCGCgu---------CGUGa--------------CGCCG- -5'
28025 3' -61 NC_005887.1 + 8106 0.67 0.322504
Target:  5'- ---aGCUCGCCGCGCucgccgaGGCGCcGCuGUu -3'
miRNA:   3'- ccugCGAGCGGCGCG-------UCGUGaCGcCG- -5'
28025 3' -61 NC_005887.1 + 1004 0.67 0.323277
Target:  5'- ---gGC-CGCCGUGCGcGCGCUGUacaccGGCu -3'
miRNA:   3'- ccugCGaGCGGCGCGU-CGUGACG-----CCG- -5'
28025 3' -61 NC_005887.1 + 4805 0.67 0.331084
Target:  5'- --gUGCUCGCggaucuCGCGCAGUuCUGCcGCg -3'
miRNA:   3'- ccuGCGAGCG------GCGCGUCGuGACGcCG- -5'
28025 3' -61 NC_005887.1 + 12369 0.67 0.331084
Target:  5'- cGugGCagGCCGaGCAGCACcGC-GCa -3'
miRNA:   3'- cCugCGagCGGCgCGUCGUGaCGcCG- -5'
28025 3' -61 NC_005887.1 + 27038 0.67 0.331084
Target:  5'- -aGCGCgCGaCCGCGCA-CGCUGCcGCc -3'
miRNA:   3'- ccUGCGaGC-GGCGCGUcGUGACGcCG- -5'
28025 3' -61 NC_005887.1 + 38991 0.67 0.334245
Target:  5'- cGAUGCUggCGgauuguuucgugccaCCGCGCAGUcgACgGCGGCu -3'
miRNA:   3'- cCUGCGA--GC---------------GGCGCGUCG--UGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 14935 0.67 0.315609
Target:  5'- cGACGCaCGCCGCGCGcugccGUACgacGCGccGCa -3'
miRNA:   3'- cCUGCGaGCGGCGCGU-----CGUGa--CGC--CG- -5'
28025 3' -61 NC_005887.1 + 32444 0.67 0.300686
Target:  5'- cGGCGaUCagGuuGCGCAGcCACUgcGCGGCg -3'
miRNA:   3'- cCUGCgAG--CggCGCGUC-GUGA--CGCCG- -5'
28025 3' -61 NC_005887.1 + 8702 0.67 0.300686
Target:  5'- cGGCGaucCGCCGCGgcgguaAGCGCUucgucGCGGCc -3'
miRNA:   3'- cCUGCga-GCGGCGCg-----UCGUGA-----CGCCG- -5'
28025 3' -61 NC_005887.1 + 29779 0.67 0.296316
Target:  5'- aGGAuCGCcgCGUCGCGCAGCucggGCcaguagcuggaagucUGCGGg -3'
miRNA:   3'- -CCU-GCGa-GCGGCGCGUCG----UG---------------ACGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.