miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 32833 0.73 0.127234
Target:  5'- cGACGUgauggcCGCCGUGCAGguCaaGCGGCa -3'
miRNA:   3'- cCUGCGa-----GCGGCGCGUCguGa-CGCCG- -5'
28025 3' -61 NC_005887.1 + 12739 0.72 0.130756
Target:  5'- -uGCGCUCGaUCGCGCcGCGCUGCaacGCg -3'
miRNA:   3'- ccUGCGAGC-GGCGCGuCGUGACGc--CG- -5'
28025 3' -61 NC_005887.1 + 17739 0.72 0.130756
Target:  5'- aGACGCUCggcacgGCCGCGCGGC--UGaUGGCg -3'
miRNA:   3'- cCUGCGAG------CGGCGCGUCGugAC-GCCG- -5'
28025 3' -61 NC_005887.1 + 7102 0.72 0.134003
Target:  5'- cGGAauCGCgCGUgGUcuaacgaggcgggGCGGCGCUGCGGCg -3'
miRNA:   3'- -CCU--GCGaGCGgCG-------------CGUCGUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 421 0.72 0.134368
Target:  5'- cGGGCaGCUCagcugcgaGCCGCuCAGCACgUGCGGg -3'
miRNA:   3'- -CCUG-CGAG--------CGGCGcGUCGUG-ACGCCg -5'
28025 3' -61 NC_005887.1 + 3397 0.72 0.138072
Target:  5'- --cUGUUCGCCGCGCgcuaccgcuGGCAggGCGGCu -3'
miRNA:   3'- ccuGCGAGCGGCGCG---------UCGUgaCGCCG- -5'
28025 3' -61 NC_005887.1 + 17274 0.72 0.141869
Target:  5'- cGGGCGagaCGUCGgGCGGCGCcGCGcGCg -3'
miRNA:   3'- -CCUGCga-GCGGCgCGUCGUGaCGC-CG- -5'
28025 3' -61 NC_005887.1 + 14132 0.72 0.141869
Target:  5'- -cGCGCUgcucaaaacCGCCgagacGCGCGGCGCugaUGCGGCg -3'
miRNA:   3'- ccUGCGA---------GCGG-----CGCGUCGUG---ACGCCG- -5'
28025 3' -61 NC_005887.1 + 23280 0.72 0.147345
Target:  5'- uGGCGgUUGCCGCagcccGCGccgaagaacaacgccGCACUGCGGCc -3'
miRNA:   3'- cCUGCgAGCGGCG-----CGU---------------CGUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 12371 0.71 0.153426
Target:  5'- uGGAC-CUCGacagcauCCGCGCGGCGgUguucGCGGCg -3'
miRNA:   3'- -CCUGcGAGC-------GGCGCGUCGUgA----CGCCG- -5'
28025 3' -61 NC_005887.1 + 385 0.71 0.153839
Target:  5'- aGGCGagcgCGCCGCGCAcGCACcacGCGaGCa -3'
miRNA:   3'- cCUGCga--GCGGCGCGU-CGUGa--CGC-CG- -5'
28025 3' -61 NC_005887.1 + 30958 0.71 0.158029
Target:  5'- cGGCGC-CgGCCGC-CAGCGCUcCGGCu -3'
miRNA:   3'- cCUGCGaG-CGGCGcGUCGUGAcGCCG- -5'
28025 3' -61 NC_005887.1 + 5279 0.71 0.158029
Target:  5'- -aACGCagUCGCCcgaGCAGCGC-GCGGCg -3'
miRNA:   3'- ccUGCG--AGCGGcg-CGUCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 5478 0.71 0.158029
Target:  5'- cGACGCagGCCgaugGCGCAGCACcgGCcGCa -3'
miRNA:   3'- cCUGCGagCGG----CGCGUCGUGa-CGcCG- -5'
28025 3' -61 NC_005887.1 + 27407 0.71 0.158029
Target:  5'- cGGCGCgUCGUaCG-GCAGCGC-GCGGCg -3'
miRNA:   3'- cCUGCG-AGCG-GCgCGUCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 32394 0.71 0.158029
Target:  5'- cGGACGaaaagUCGUauuugaaauCGCGCAGC-UUGCGGCc -3'
miRNA:   3'- -CCUGCg----AGCG---------GCGCGUCGuGACGCCG- -5'
28025 3' -61 NC_005887.1 + 19542 0.71 0.166718
Target:  5'- cGGAUGC--GCCGCGUAGCucgugaacaACaGCGGCc -3'
miRNA:   3'- -CCUGCGagCGGCGCGUCG---------UGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 1230 0.71 0.166718
Target:  5'- uGGCGggCGCUGCGCGGCGCU-CaGCa -3'
miRNA:   3'- cCUGCgaGCGGCGCGUCGUGAcGcCG- -5'
28025 3' -61 NC_005887.1 + 16936 0.71 0.166718
Target:  5'- cGGGCGCgaugCGUgaGCGCuucaaccGCGCgGCGGCa -3'
miRNA:   3'- -CCUGCGa---GCGg-CGCGu------CGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 36817 0.71 0.171222
Target:  5'- uGGGCGCagaaUCGUgCGUGCcugcugcggccGGUGCUGCGGCc -3'
miRNA:   3'- -CCUGCG----AGCG-GCGCG-----------UCGUGACGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.