Results 41 - 60 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28025 | 3' | -61 | NC_005887.1 | + | 10985 | 0.77 | 0.063175 |
Target: 5'- uGGACGCUCGUCgaggaugGCGUGGUGCucgggUGCGGCg -3' miRNA: 3'- -CCUGCGAGCGG-------CGCGUCGUG-----ACGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 13088 | 0.77 | 0.061583 |
Target: 5'- cGGCGCUCGaUCGCGgAGUGCUGCagGGCg -3' miRNA: 3'- cCUGCGAGC-GGCGCgUCGUGACG--CCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 3599 | 0.77 | 0.056554 |
Target: 5'- gGGA-GCUCacguugcgccagGCCGCGCAGCGCUuCGGCc -3' miRNA: 3'- -CCUgCGAG------------CGGCGCGUCGUGAcGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 27705 | 0.78 | 0.050464 |
Target: 5'- -uAC-CUCGCCGCGUAGCACUcGaCGGCg -3' miRNA: 3'- ccUGcGAGCGGCGCGUCGUGA-C-GCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 41976 | 0.79 | 0.045014 |
Target: 5'- cGGcGCGCUCGCCuaucaGCAGCACggccUGCGGCc -3' miRNA: 3'- -CC-UGCGAGCGGcg---CGUCGUG----ACGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 11715 | 0.75 | 0.091326 |
Target: 5'- aGAuCGCuUCGCCGCGC-GCACgGCGcGCa -3' miRNA: 3'- cCU-GCG-AGCGGCGCGuCGUGaCGC-CG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 10026 | 0.74 | 0.093908 |
Target: 5'- -cGCGCg-GCCGCGCuGGCACgaacaGCGGCa -3' miRNA: 3'- ccUGCGagCGGCGCG-UCGUGa----CGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 17739 | 0.72 | 0.130756 |
Target: 5'- aGACGCUCggcacgGCCGCGCGGC--UGaUGGCg -3' miRNA: 3'- cCUGCGAG------CGGCGCGUCGugAC-GCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 12739 | 0.72 | 0.130756 |
Target: 5'- -uGCGCUCGaUCGCGCcGCGCUGCaacGCg -3' miRNA: 3'- ccUGCGAGC-GGCGCGuCGUGACGc--CG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 14518 | 0.73 | 0.127234 |
Target: 5'- uGGucCGCUUGCagGCGCGGC-CgucgGCGGCg -3' miRNA: 3'- -CCu-GCGAGCGg-CGCGUCGuGa---CGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 32833 | 0.73 | 0.127234 |
Target: 5'- cGACGUgauggcCGCCGUGCAGguCaaGCGGCa -3' miRNA: 3'- cCUGCGa-----GCGGCGCGUCguGa-CGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 13157 | 0.73 | 0.1238 |
Target: 5'- cGuCGCUUGCCGCGCGcGCGCagacaGCGGg -3' miRNA: 3'- cCuGCGAGCGGCGCGU-CGUGa----CGCCg -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 14220 | 0.73 | 0.1238 |
Target: 5'- aGGGCGg-CGCCGCGCuGUucgGC-GCGGCa -3' miRNA: 3'- -CCUGCgaGCGGCGCGuCG---UGaCGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 13379 | 0.73 | 0.120452 |
Target: 5'- uGGCGCUCgcgcugaagGCCgGCGCGGCggACgucgGCGGCa -3' miRNA: 3'- cCUGCGAG---------CGG-CGCGUCG--UGa---CGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 13613 | 0.73 | 0.120452 |
Target: 5'- --cUGCUgGCaGCGCGGCGCgcgGCGGCc -3' miRNA: 3'- ccuGCGAgCGgCGCGUCGUGa--CGCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 2523 | 0.73 | 0.117189 |
Target: 5'- cGGACuGCcgcaCGCUGCGCaaGGCGCUGUcgGGCg -3' miRNA: 3'- -CCUG-CGa---GCGGCGCG--UCGUGACG--CCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 27231 | 0.73 | 0.114008 |
Target: 5'- cGGGCGCaUCGCgGCGCAacuGCAUcGCGcGCc -3' miRNA: 3'- -CCUGCG-AGCGgCGCGU---CGUGaCGC-CG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 40157 | 0.74 | 0.107887 |
Target: 5'- -cGCGCUCGCCGCGUgugagcuGCGC-GaCGGCa -3' miRNA: 3'- ccUGCGAGCGGCGCGu------CGUGaC-GCCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 4246 | 0.74 | 0.104943 |
Target: 5'- cGACGCUCgGCCGCacGCAGUcugaACUGCucGGCc -3' miRNA: 3'- cCUGCGAG-CGGCG--CGUCG----UGACG--CCG- -5' |
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28025 | 3' | -61 | NC_005887.1 | + | 8559 | 0.74 | 0.102075 |
Target: 5'- aGGGCGCaUGCCGaagGCAGCACcGCaGCa -3' miRNA: 3'- -CCUGCGaGCGGCg--CGUCGUGaCGcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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