miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 39404 0.74 0.107887
Target:  5'- aGGAUGgUCGCgGCGguGC-C-GCGGCg -3'
miRNA:   3'- -CCUGCgAGCGgCGCguCGuGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 39097 0.76 0.075054
Target:  5'- cGACGaa-GuuGCGCAGCGCgaGCGGCg -3'
miRNA:   3'- cCUGCgagCggCGCGUCGUGa-CGCCG- -5'
28025 3' -61 NC_005887.1 + 38991 0.67 0.334245
Target:  5'- cGAUGCUggCGgauuguuucgugccaCCGCGCAGUcgACgGCGGCu -3'
miRNA:   3'- cCUGCGA--GC---------------GGCGCGUCG--UGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 38637 0.68 0.279333
Target:  5'- cGGAuCGCggUCGgCGCGCGGCucgaCGGCg -3'
miRNA:   3'- -CCU-GCG--AGCgGCGCGUCGugacGCCG- -5'
28025 3' -61 NC_005887.1 + 38101 0.68 0.259204
Target:  5'- -cGCGCUUGCCGUGCuccaucgcgAGCaggaaaacaACcGCGGCg -3'
miRNA:   3'- ccUGCGAGCGGCGCG---------UCG---------UGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 37866 0.74 0.107887
Target:  5'- cGAUGCgcgCGCCGUuCGGCACcuucGCGGCa -3'
miRNA:   3'- cCUGCGa--GCGGCGcGUCGUGa---CGCCG- -5'
28025 3' -61 NC_005887.1 + 37677 0.7 0.211304
Target:  5'- aGACcCUCGCCgucuGCGCAGCGguCUGCGcGUc -3'
miRNA:   3'- cCUGcGAGCGG----CGCGUCGU--GACGC-CG- -5'
28025 3' -61 NC_005887.1 + 37597 0.68 0.268447
Target:  5'- -cGCGCUCGUCGCaaaAGCACcgccgguauugcucGCGGCg -3'
miRNA:   3'- ccUGCGAGCGGCGcg-UCGUGa-------------CGCCG- -5'
28025 3' -61 NC_005887.1 + 37449 0.71 0.173053
Target:  5'- cGGCGCUUGCCuGCGCGguuugcaguGCGCcggaugcgaucaggGCGGCg -3'
miRNA:   3'- cCUGCGAGCGG-CGCGU---------CGUGa-------------CGCCG- -5'
28025 3' -61 NC_005887.1 + 37206 0.66 0.363684
Target:  5'- cGGCGCgccgaCGUCGgGCAGCGCgGUcaugccgagcuuGGCg -3'
miRNA:   3'- cCUGCGa----GCGGCgCGUCGUGaCG------------CCG- -5'
28025 3' -61 NC_005887.1 + 37055 0.66 0.355329
Target:  5'- uGGCGUagaacuUCGCCGCGCgcugcucgGGCgACUGCGu- -3'
miRNA:   3'- cCUGCG------AGCGGCGCG--------UCG-UGACGCcg -5'
28025 3' -61 NC_005887.1 + 36985 0.67 0.315609
Target:  5'- cGGGucgaGCUCGCCG-GCgAGCACgcGCaGGCc -3'
miRNA:   3'- -CCUg---CGAGCGGCgCG-UCGUGa-CG-CCG- -5'
28025 3' -61 NC_005887.1 + 36922 0.81 0.028419
Target:  5'- cGGGCGCgUgGUCGCGcCGGuCGCUGCGGCg -3'
miRNA:   3'- -CCUGCG-AgCGGCGC-GUC-GUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 36817 0.71 0.171222
Target:  5'- uGGGCGCagaaUCGUgCGUGCcugcugcggccGGUGCUGCGGCc -3'
miRNA:   3'- -CCUGCG----AGCG-GCGCG-----------UCGUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 36062 0.67 0.315609
Target:  5'- cGACGCgcucgcgcaCGCCGUcgauguacaGCuGCACguagGCGGCc -3'
miRNA:   3'- cCUGCGa--------GCGGCG---------CGuCGUGa---CGCCG- -5'
28025 3' -61 NC_005887.1 + 35818 0.66 0.363684
Target:  5'- -cGCGCUguguuccucgugCGCCGCGuCGGCGuagaucaucgcCUGCGGa -3'
miRNA:   3'- ccUGCGA------------GCGGCGC-GUCGU-----------GACGCCg -5'
28025 3' -61 NC_005887.1 + 35661 0.7 0.211304
Target:  5'- cGACGCU-GUCGacauacaGCAGCGCgcgaucgGCGGCc -3'
miRNA:   3'- cCUGCGAgCGGCg------CGUCGUGa------CGCCG- -5'
28025 3' -61 NC_005887.1 + 35321 0.7 0.180556
Target:  5'- --uCGCUCcacuGCCGCGCGcCGCgGCGGCc -3'
miRNA:   3'- ccuGCGAG----CGGCGCGUcGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 35205 0.76 0.07297
Target:  5'- gGGGCGaUUCGuuGCGCAGCAgcUUGuCGGCc -3'
miRNA:   3'- -CCUGC-GAGCggCGCGUCGU--GAC-GCCG- -5'
28025 3' -61 NC_005887.1 + 34701 0.7 0.18539
Target:  5'- cGGGCgGCcgUCGUCGCGCuugcGGUGC-GCGGCg -3'
miRNA:   3'- -CCUG-CG--AGCGGCGCG----UCGUGaCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.