miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28027 3' -56.4 NC_005887.1 + 40813 0.66 0.613832
Target:  5'- cCAGUccuUCGCGGU--CgUCGAcaGCAGGUCc -3'
miRNA:   3'- -GUCA---AGCGCCGcuGgAGCU--UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 37533 0.66 0.613832
Target:  5'- uGGUUggCGCGGCagaacugcgcgaGAUCcgCGAGCAcGGCCu -3'
miRNA:   3'- gUCAA--GCGCCG------------CUGGa-GCUUGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 27538 0.66 0.613832
Target:  5'- uCAGcgUCGCGGCcGCCagaUUGAuCGGGUCc -3'
miRNA:   3'- -GUCa-AGCGCCGcUGG---AGCUuGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 27421 0.66 0.602796
Target:  5'- gCAGcgCGCGGCGugCgUCGAucgcgagugauuGCAgcGGCa -3'
miRNA:   3'- -GUCaaGCGCCGCugG-AGCU------------UGU--CCGg -5'
28027 3' -56.4 NC_005887.1 + 2306 0.66 0.602796
Target:  5'- aCGGUaUCG-GGCGuaggccggccGCCUCGAGCcGcGCCa -3'
miRNA:   3'- -GUCA-AGCgCCGC----------UGGAGCUUGuC-CGG- -5'
28027 3' -56.4 NC_005887.1 + 14337 0.66 0.602796
Target:  5'- aGGUgaaCGCGGCGAUCgUGaAGCAGcguGCCg -3'
miRNA:   3'- gUCAa--GCGCCGCUGGaGC-UUGUC---CGG- -5'
28027 3' -56.4 NC_005887.1 + 12584 0.66 0.602796
Target:  5'- ----aCGCGGCGAuCCUCGcgauCAGcucGCCg -3'
miRNA:   3'- gucaaGCGCCGCU-GGAGCuu--GUC---CGG- -5'
28027 3' -56.4 NC_005887.1 + 2350 0.66 0.591785
Target:  5'- -----gGCgGGCGACCagCGcucGCAGGCCg -3'
miRNA:   3'- gucaagCG-CCGCUGGa-GCu--UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 5809 0.66 0.591785
Target:  5'- cCAGacgGCGGCGAUCgagUCGGcGCGGGUCg -3'
miRNA:   3'- -GUCaagCGCCGCUGG---AGCU-UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 26087 0.66 0.590686
Target:  5'- gCGGcccgCGCGGCGuuucaugGCgUCGAGCAGGa- -3'
miRNA:   3'- -GUCaa--GCGCCGC-------UGgAGCUUGUCCgg -5'
28027 3' -56.4 NC_005887.1 + 38099 0.66 0.580809
Target:  5'- gCAGUUCagacuGCGuGCGGCCgagcgucggcgCGAGCAGcacGCCu -3'
miRNA:   3'- -GUCAAG-----CGC-CGCUGGa----------GCUUGUC---CGG- -5'
28027 3' -56.4 NC_005887.1 + 15265 0.66 0.580809
Target:  5'- gCAGUgcugCGCGGCGAgcguCCgccggCGAACGagacuGCCg -3'
miRNA:   3'- -GUCAa---GCGCCGCU----GGa----GCUUGUc----CGG- -5'
28027 3' -56.4 NC_005887.1 + 16861 0.66 0.580809
Target:  5'- aGGUguacCGCGGCGcggacGgCUCGA-CAGGCa -3'
miRNA:   3'- gUCAa---GCGCCGC-----UgGAGCUuGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 33466 0.67 0.56334
Target:  5'- aGGUcCGCGagcgcguacggcgucGCGAUCUCGA-CGGGCg -3'
miRNA:   3'- gUCAaGCGC---------------CGCUGGAGCUuGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 6288 0.67 0.558994
Target:  5'- ---aUCGaCGGCGugCgCGAGCgcgucgAGGCCu -3'
miRNA:   3'- gucaAGC-GCCGCugGaGCUUG------UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 1086 0.67 0.548171
Target:  5'- gCAGgUCGaCGGCGccauuGCCgacgcCGAGCAGGUg -3'
miRNA:   3'- -GUCaAGC-GCCGC-----UGGa----GCUUGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 40333 0.67 0.537415
Target:  5'- -cGUUCGCcGCcgaaauggacuGGCCgUCGAGCGcGGCCg -3'
miRNA:   3'- guCAAGCGcCG-----------CUGG-AGCUUGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 29850 0.67 0.537415
Target:  5'- gAGgaugUCGCaGGCGAugaacacguCCUgCG-GCAGGCCg -3'
miRNA:   3'- gUCa---AGCG-CCGCU---------GGA-GCuUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 40798 0.67 0.537415
Target:  5'- aGGUUCGUGGCGGCgacgcgccgCUCGAcgaugACgAGGUg -3'
miRNA:   3'- gUCAAGCGCCGCUG---------GAGCU-----UG-UCCGg -5'
28027 3' -56.4 NC_005887.1 + 34524 0.67 0.537415
Target:  5'- ---gUCGCuGCGACCaCGGGCuuuuGGGCCc -3'
miRNA:   3'- gucaAGCGcCGCUGGaGCUUG----UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.