Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28028 | 5' | -59 | NC_005887.1 | + | 24900 | 0.68 | 0.35162 |
Target: 5'- uUGCGCGU--CGGAUUcgGGC-CGUAGCg -3' miRNA: 3'- -ACGCGCAccGCCUAG--CCGuGCAUCGg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 25354 | 1.12 | 0.000201 |
Target: 5'- cUGCGCGUGGCGGAUCGGCACGUAGCCg -3' miRNA: 3'- -ACGCGCACCGCCUAGCCGUGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 25512 | 0.68 | 0.343362 |
Target: 5'- gGCGCGgcgGGUGG--CGGCAuaauCGUcGCCg -3' miRNA: 3'- aCGCGCa--CCGCCuaGCCGU----GCAuCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 26209 | 0.67 | 0.394988 |
Target: 5'- gGCGCGccggugguUGGCGGGgugguugcgcgCGGCGCagcGCCa -3' miRNA: 3'- aCGCGC--------ACCGCCUa----------GCCGUGcauCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 26394 | 0.75 | 0.110916 |
Target: 5'- cUGCGacaGcGGCGug-CGGCGCGUGGCCg -3' miRNA: 3'- -ACGCg--CaCCGCcuaGCCGUGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 26828 | 0.71 | 0.218614 |
Target: 5'- cUGCGCGUGcGCGagcgGGCGCGUcuGCCg -3' miRNA: 3'- -ACGCGCAC-CGCcuagCCGUGCAu-CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 27256 | 0.66 | 0.447474 |
Target: 5'- cGCGCGccGGCccgcgucgccaauGAUCGGCACGacuuccauGCCg -3' miRNA: 3'- aCGCGCa-CCGc------------CUAGCCGUGCau------CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 27383 | 0.67 | 0.37723 |
Target: 5'- cUGCGCGgcguaGGCGucGAguugCGGCGCGUcguacGGCa -3' miRNA: 3'- -ACGCGCa----CCGC--CUa---GCCGUGCA-----UCGg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 28109 | 0.7 | 0.261827 |
Target: 5'- cGUGCGUGaCGGucUGGUugGUGGUCa -3' miRNA: 3'- aCGCGCACcGCCuaGCCGugCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 28336 | 0.69 | 0.282378 |
Target: 5'- gGCGCGccGGCGGuugcggaGGCGCGcGGCg -3' miRNA: 3'- aCGCGCa-CCGCCuag----CCGUGCaUCGg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 29763 | 0.66 | 0.432079 |
Target: 5'- aGCGuCGcGGcCGGGUCGGCggacaccauGCGcauGCCg -3' miRNA: 3'- aCGC-GCaCC-GCCUAGCCG---------UGCau-CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 30525 | 0.67 | 0.413276 |
Target: 5'- -cCGCGUaGGCGGccGUCGGC-CGagacGCCa -3' miRNA: 3'- acGCGCA-CCGCC--UAGCCGuGCau--CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 30940 | 0.67 | 0.376357 |
Target: 5'- aGCGCGcucGGCGGugauGUCGGCgcccGCGUAcgugaggaacuucGCCc -3' miRNA: 3'- aCGCGCa--CCGCC----UAGCCG----UGCAU-------------CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 31009 | 0.66 | 0.422615 |
Target: 5'- -uCGCGUGGCG---CGGCGCa-GGCCa -3' miRNA: 3'- acGCGCACCGCcuaGCCGUGcaUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 31386 | 0.66 | 0.461192 |
Target: 5'- cGCGCucGGCGuagCGGUGCGU-GCCg -3' miRNA: 3'- aCGCGcaCCGCcuaGCCGUGCAuCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 32414 | 0.68 | 0.327268 |
Target: 5'- cGuCGaCGUGGCcGG-CGGCgAUGUGGCCg -3' miRNA: 3'- aC-GC-GCACCGcCUaGCCG-UGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 32674 | 0.71 | 0.235729 |
Target: 5'- cGCGCGUGcGCGcuUCGGCaaccGCGUacagcgcacggauAGCCg -3' miRNA: 3'- aCGCGCAC-CGCcuAGCCG----UGCA-------------UCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 32717 | 0.67 | 0.386042 |
Target: 5'- cGCGCGguucacccacGGCGGGguagcgCGGCgcucGCGUGcgcGCCg -3' miRNA: 3'- aCGCGCa---------CCGCCUa-----GCCG----UGCAU---CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 32782 | 0.74 | 0.146263 |
Target: 5'- gGCuCGUGcGCaGGAUCGGCGCGc-GCCg -3' miRNA: 3'- aCGcGCAC-CG-CCUAGCCGUGCauCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 33043 | 0.68 | 0.332837 |
Target: 5'- gUGUGCGUcGGCGuuUCGGUgcccguaaccugcgGCGUcGCCg -3' miRNA: 3'- -ACGCGCA-CCGCcuAGCCG--------------UGCAuCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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