miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 21069 0.68 0.360018
Target:  5'- gGCGCcggugugggGUGGCguuggcuugaacGGuAUCGGCGCGgucGCCg -3'
miRNA:   3'- aCGCG---------CACCG------------CC-UAGCCGUGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 15201 0.68 0.360018
Target:  5'- cGCGCccGUGGCcGuUCGGCcGCGUGaucGCCg -3'
miRNA:   3'- aCGCG--CACCGcCuAGCCG-UGCAU---CGG- -5'
28028 5' -59 NC_005887.1 + 41956 0.67 0.368555
Target:  5'- gUGCucGCGUGGUGcGugcgCGGCGCGcucGCCu -3'
miRNA:   3'- -ACG--CGCACCGC-Cua--GCCGUGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 13399 0.67 0.368555
Target:  5'- gGCGC--GGCGGAcgUCGGCGgcaAGCCg -3'
miRNA:   3'- aCGCGcaCCGCCU--AGCCGUgcaUCGG- -5'
28028 5' -59 NC_005887.1 + 38506 0.67 0.376357
Target:  5'- cGCuCGUGGCGGGUaucggucUGGCGgGUAGg- -3'
miRNA:   3'- aCGcGCACCGCCUA-------GCCGUgCAUCgg -5'
28028 5' -59 NC_005887.1 + 30940 0.67 0.376357
Target:  5'- aGCGCGcucGGCGGugauGUCGGCgcccGCGUAcgugaggaacuucGCCc -3'
miRNA:   3'- aCGCGCa--CCGCC----UAGCCG----UGCAU-------------CGG- -5'
28028 5' -59 NC_005887.1 + 12312 0.67 0.37723
Target:  5'- gGCGCucgccuaugaggGUGGCG--UCGGCGCGUucGUCa -3'
miRNA:   3'- aCGCG------------CACCGCcuAGCCGUGCAu-CGG- -5'
28028 5' -59 NC_005887.1 + 27383 0.67 0.37723
Target:  5'- cUGCGCGgcguaGGCGucGAguugCGGCGCGUcguacGGCa -3'
miRNA:   3'- -ACGCGCa----CCGC--CUa---GCCGUGCA-----UCGg -5'
28028 5' -59 NC_005887.1 + 32717 0.67 0.386042
Target:  5'- cGCGCGguucacccacGGCGGGguagcgCGGCgcucGCGUGcgcGCCg -3'
miRNA:   3'- aCGCGCa---------CCGCCUa-----GCCG----UGCAU---CGG- -5'
28028 5' -59 NC_005887.1 + 26209 0.67 0.394988
Target:  5'- gGCGCGccggugguUGGCGGGgugguugcgcgCGGCGCagcGCCa -3'
miRNA:   3'- aCGCGC--------ACCGCCUa----------GCCGUGcauCGG- -5'
28028 5' -59 NC_005887.1 + 293 0.67 0.404067
Target:  5'- -cUGCGUGGCGuGAUCaGCGa--GGCCg -3'
miRNA:   3'- acGCGCACCGC-CUAGcCGUgcaUCGG- -5'
28028 5' -59 NC_005887.1 + 38230 0.67 0.404067
Target:  5'- uUGCGCGUGGcCGGGaUGGU-CG-AGCg -3'
miRNA:   3'- -ACGCGCACC-GCCUaGCCGuGCaUCGg -5'
28028 5' -59 NC_005887.1 + 1988 0.67 0.413276
Target:  5'- cGCGCGacGGCGGcaCGGCcGCGcucgacGGCCa -3'
miRNA:   3'- aCGCGCa-CCGCCuaGCCG-UGCa-----UCGG- -5'
28028 5' -59 NC_005887.1 + 30525 0.67 0.413276
Target:  5'- -cCGCGUaGGCGGccGUCGGC-CGagacGCCa -3'
miRNA:   3'- acGCGCA-CCGCC--UAGCCGuGCau--CGG- -5'
28028 5' -59 NC_005887.1 + 39431 0.66 0.421675
Target:  5'- uUGCGCagcuUGGCGG--CGGCGuCGUucgcggcGGCCg -3'
miRNA:   3'- -ACGCGc---ACCGCCuaGCCGU-GCA-------UCGG- -5'
28028 5' -59 NC_005887.1 + 31009 0.66 0.422615
Target:  5'- -uCGCGUGGCG---CGGCGCa-GGCCa -3'
miRNA:   3'- acGCGCACCGCcuaGCCGUGcaUCGG- -5'
28028 5' -59 NC_005887.1 + 1488 0.66 0.422615
Target:  5'- gGCGUGcGGCGcucGcgCGGCGCG--GCCg -3'
miRNA:   3'- aCGCGCaCCGC---CuaGCCGUGCauCGG- -5'
28028 5' -59 NC_005887.1 + 14652 0.66 0.429226
Target:  5'- aGUGCuacgcGGCGaGGUaCGGCACGUgaugcagacgaucaAGCCg -3'
miRNA:   3'- aCGCGca---CCGC-CUA-GCCGUGCA--------------UCGG- -5'
28028 5' -59 NC_005887.1 + 29763 0.66 0.432079
Target:  5'- aGCGuCGcGGcCGGGUCGGCggacaccauGCGcauGCCg -3'
miRNA:   3'- aCGC-GCaCC-GCCUAGCCG---------UGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 19189 0.66 0.432079
Target:  5'- gGCGCG-GGCguGGAgacaggCGGCGCGguuacgacgAGCg -3'
miRNA:   3'- aCGCGCaCCG--CCUa-----GCCGUGCa--------UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.